PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_33370V3.1.p

Common Name

PHYPADRAFT_235403, PPTIM5

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 243aa MW: 26593.4 Da PI: 10.3359

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_33370V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.3	8.4e-13	17	51	10	44
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstg 44 q+t+skR+ g++ KA+EL +LC+ +v +i f ++g Pp3c3_33370V3.1.p 17 QTTYSKRKVGLINKAKELGILCGNQVVMIAFNPSG 51 9*****************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-10	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.082	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-15	1	76	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.76E-16	2	70	No hit	No description
Pfam	PF00319	4.2E-12	15	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-5	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-5	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGRKKIDIEL LPAKKIQTTY SKRKVGLINK AKELGILCGN QVVMIAFNPS GSDVEAVATN 60 GDVMDILQRF LDFRQFHPQQ VQSVQVSSTG APFNHPQAPQ DSTLGQLQPT GSASNTPVHD 120 VLVQSMASTS EAQIVGPGKQ PNIKLASRGG HYNEYGAFKG ARLGLQPRMG RFVPLCARIG 180 WGGCRVFQGH LPELHRTTGL RADQCAQSGW DRRSHFQGQL PVLQYAMRHA AARCEYSVRF 240 WA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370207.1	0.0	uncharacterized protein LOC112279772
Refseq	XP_024370208.1	0.0	uncharacterized protein LOC112279772
TrEMBL	A9TBF9	0.0	A9TBF9_PHYPA; Type I MADS-domain protein PPTIM5
STRING	PP1S198_151V6.1	1e-173	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-09	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Pp3c3_33370V3.1.p
Entrez Gene	5939112

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]