PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_33930V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 236aa    MW: 26121.8 Da    PI: 10.2176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_33930V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.4e-162472155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr ++ +g Wv eIr        ++r++lg+f tae+Aa+a++ a+++l+g
  Pp3c3_33930V3.1.p 24 PVYRGVR-RP-WGTWVTEIRRsK-----KTRIWLGSFETAEMAARAHDTAALSLRG 72
                       68****8.89.**********33.....6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-102472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-272581IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-162580IPR016177DNA-binding domain
SMARTSM003802.0E-282586IPR001471AP2/ERF domain
PROSITE profilePS5103219.732580IPR001471AP2/ERF domain
CDDcd000185.31E-272680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVASDSLPSK MLLKLADGKD SRHPVYRGVR RPWGTWVTEI RRSKKTRIWL GSFETAEMAA  60
RAHDTAALSL RGSSAHLNFP KLASSLPRPH DLSDKCIQAA ANEAAKRFSL EVTSQRQFFM  120
LDATASSSIA DSANPHSHCK LQAIAVPNSL TRIPMLTTCN AEPEHPEEYF SSKRTKLPLP  180
TTPPNPSNYR ENSVRALFLS PRFERQEDVL LPMNAVSSHS TMAWQDLGTR IAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-171880772Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370190.11e-174dehydration-responsive element-binding protein 3-like
TrEMBLA0A2K1KX401e-172A0A2K1KX40_PHYPA; Uncharacterized protein
STRINGPP1S112_23V6.11e-173(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-32ERF family protein