PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_34700V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 575aa    MW: 63365.8 Da    PI: 5.3475
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_34700V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.13.6e-27359412255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +rlrWt  LH+rFv av++ GG+++AtPk++l +m+ +g+t++hvkSHLQk+Rl
  Pp3c3_34700V3.1.p 359 TRLRWTDALHDRFVAAVAECGGPDRATPKSVLLAMGCPGITIYHVKSHLQKFRL 412
                        7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.765355415IPR017930Myb domain
SuperFamilySSF466896.09E-13357414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-25357413IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-20359413IPR006447Myb domain, plants
PfamPF002491.6E-5360410IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGDALGHEAG ETRGEVALPR THIEVGYELQ SVVTGFANHN LIGNQQEQDS IPPRVDEPLN  60
YISPTQGFTA CHQQTPFGTT HNSHFLPPQY RWQPIEDAGQ VQEHQVSPLE QWQPTRTTPT  120
TRAPRPWNSA DLLEGHAVPR QSSAPTPIVP ITPFRRRSSR VIRPMPTLRS RGSNRPPASL  180
EAQRNLFGAV PRCTDLPWPF LYVQPNLDVR PTIPFRLQPA ATLDGIPPPP PSATCTPTKA  240
TPNESNSSQT RFASKWSDRG QMTGSNSPTD SEVPFSWPDL IDYGTPNPVD ASAEFTMQSD  300
SVAPKQLSVS TSAASVPQLV ASPQLNQISG AAVSQESPSQ PSDDDSAIYN FLAAHAARTR  360
LRWTDALHDR FVAAVAECGG PDRATPKSVL LAMGCPGITI YHVKSHLQKF RLQSEASTAD  420
SMRRRPRECF RLDPVVQAQM ERHAEVQKLL RQELESQREL QVRIEHQHLQ LQRMLEEQLA  480
RPRRELGVVI EPEAVAAKSQ LEEANTAIVP QEIFYSPDED PYMGISLEDS LPSSDESHIG  540
EAASNLFIHS LDIEDEISPS LLETTPSGSL NCLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-15357411155Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KX720.0A0A2K1KX72_PHYPA; Uncharacterized protein
STRINGPP1S112_113V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.18e-26G2-like family protein