PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_34900V3.1.p

Common Name

PHYPADRAFT_233986

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 430aa MW: 46124.3 Da PI: 5.3131

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_34900V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	133	187	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHe+F+ av++LGG+++AtPk+++ lm+v+g+t++hvkSHLQkYRl Pp3c3_34900V3.1.p 133 KTRLRWTPELHEKFITAVAHLGGADRATPKAVMGLMGVQGITIYHVKSHLQKYRL 187 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.704	130	190	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	131	187	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-30	132	188	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-23	133	188	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-9	135	186	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-20	219	264	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MWKKWGLLDS SDGAGVPLLE GSEAAAEAGA VVAMNELEPV PASDVYGAGA EWLQWTQFVP 60 QDESLAKCWT EIIDVEQDDG PTLLQTTRTA PVSAPPPVVE KRSSTYTGAV SAACPGSPSL 120 SSGAAPSVSA PGKTRLRWTP ELHEKFITAV AHLGGADRAT PKAVMGLMGV QGITIYHVKS 180 HLQKYRLARY MPEITEEQKA ERRRTESLLT PLEISSSYQI TQALQMQMEV QKKLHEQLEV 240 QRELQLRIEA QGQSLQKMIE AQAKVGGMLL DKIPDSTAVA LAPTPVSIGP AASPLPDTGP 300 EALPEGSCPE TPNPTTSDVL CTNEINKREP IEATTIDNMP IDEPLIKRAR IDEGCLQASQ 360 SAHPKPKVST TIYSSSQAVQ GQRPSHLMDE KSLSDGQITK GTPQRLPQQS HAPCVTQHPG 420 PVARTPVQA*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MWKKWGLLDS SDGAGVPLLE GSEAAAEAGA VVAMNELEPV PASDVYGAGA EWLQWTQFVP  60
QDESLAKCWT EIIDVEQDDG PTLLQTTRTA PVSAPPPVVE KRSSTYTGAV SAACPGSPSL  120
SSGAAPSVSA PGKTRLRWTP ELHEKFITAV AHLGGADRAT PKAVMGLMGV QGITIYHVKS  180
HLQKYRLARY MPEITEEQKA ERRRTESLLT PLEISSSYQI TQALQMQMEV QKKLHEQLEV  240
QRELQLRIEA QGQSLQKMIE AQAKVGGMLL DKIPDSTAVA LAPTPVSIGP AASPLPDTGP  300
EALPEGSCPE TPNPTTSDVL CTNEINKREP IEATTIDNMP IDEPLIKRAR IDEGCLQASQ  360
SAHPKPKVST TIYSSSQAVQ GQRPSHLMDE KSLSDGQITK GTPQRLPQQS HAPCVTQHPG  420
PVARTPVQA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	132	190	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11848	0.0	protonema\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369628.1	0.0	myb family transcription factor PHL7-like isoform X2
TrEMBL	A0A2K1KX82	0.0	A0A2K1KX82_PHYPA; Uncharacterized protein
STRING	PP1S112_141V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-57	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_34900V3.1.p
Entrez Gene	5932480

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]