PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_37540V3.1.p

Common Name

PpCCA1b

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 960aa MW: 101296 Da PI: 6.0098

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_37540V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	57	101	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Pp3c3_37540V3.1.p 57 RERWTEEEHQKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 101 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-16	51	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.436	52	106	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.7E-16	55	104	IPR006447	Myb domain, plants
SMART	SM00717	2.0E-13	56	104	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	57	100	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-9	57	97	IPR009057	Homeodomain-like
CDD	cd00167	4.05E-10	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MIPMTPSSSA AGYREHEGAG EEGTYWPSVS PGVPLSTSGD EGASTKVRKP YTITKQRERW 60 TEEEHQKFLE ALKLYGRAWR RIEEHIGTKT AVQIRSHAQK FFSKIERDVT AGQGTETGVA 120 QVIDIPPPRP KRKPTHPYPR KAGRSFGKTS EDECPLAAAG SIVSSSGVST ANISEACLKE 180 GVWDQDDTGV AGHQDAAKAK KDADTAHSWG VPKTVNSATS GSPTARPVNV ALNGGLPLNN 240 ISPVPIPGFP AMPPWNRLFG GAMNPAMMNP AMLNSAMMNP QGMLMPWATA PNVQGLENGG 300 AVSAMAATIA AASAWWAMQG GMPPGVMHPA LGAMYLGAAP PLAIPTPYIF SQCVPQEITV 360 AAAPCADGNE VPTAQVVDDG QEVLSNNNHS RSSAMRRAER AQRVKELKAR RMGSGNHLLS 420 VSSDICASTS GGSGTNLTTQ LTAGGLTSES AVNSLSKGSS LPADLSKVKH VLNGLIRKDR 480 EAPVDGCSAD DGVDNRKRLR GSRPSDDTAM PDGEGYHSTS GLGREAPGSM DSHLEKVRSV 540 SGSNSIPGKF TKVDVERLAC DEKTAPTQAS CGSDVSEGAG VAPIDGDGDG DASGGGPSSN 600 SSACGNVPGG NERSGSSDGS SEGEATCNVD RQREAGKNGT SSSDPEAEEE ADEKVGRAAE 660 QFTFNEFLPV SKDGDKHEKP ETSSRLPRTV SIDGEQRKEV TERGQIAFQA LFKRDTLPRT 720 FSPPPGLALG TGTKEAAKQQ PSVSTMSRSL SANAITCDSL ELRTSQRNHK DQDSAFNTWN 780 HLRGTSSASK VDRCESGISI PSSRPTKSLE DLRSSERRRG SRKGRSHTGA NNWLQLWTDT 840 SSLDKDEDAD EDDEEDESAD SGADDGCKKQ QQKASFVCKL DMSISNQEVE LISDVEGTGA 900 SSLNISSTVR SQTLFLSVGT GGLKNAVSNV PTRTVKYSGV GFVPYQRAST RTEPLVDKL*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MIPMTPSSSA AGYREHEGAG EEGTYWPSVS PGVPLSTSGD EGASTKVRKP YTITKQRERW  60
TEEEHQKFLE ALKLYGRAWR RIEEHIGTKT AVQIRSHAQK FFSKIERDVT AGQGTETGVA  120
QVIDIPPPRP KRKPTHPYPR KAGRSFGKTS EDECPLAAAG SIVSSSGVST ANISEACLKE  180
GVWDQDDTGV AGHQDAAKAK KDADTAHSWG VPKTVNSATS GSPTARPVNV ALNGGLPLNN  240
ISPVPIPGFP AMPPWNRLFG GAMNPAMMNP AMLNSAMMNP QGMLMPWATA PNVQGLENGG  300
AVSAMAATIA AASAWWAMQG GMPPGVMHPA LGAMYLGAAP PLAIPTPYIF SQCVPQEITV  360
AAAPCADGNE VPTAQVVDDG QEVLSNNNHS RSSAMRRAER AQRVKELKAR RMGSGNHLLS  420
VSSDICASTS GGSGTNLTTQ LTAGGLTSES AVNSLSKGSS LPADLSKVKH VLNGLIRKDR  480
EAPVDGCSAD DGVDNRKRLR GSRPSDDTAM PDGEGYHSTS GLGREAPGSM DSHLEKVRSV  540
SGSNSIPGKF TKVDVERLAC DEKTAPTQAS CGSDVSEGAG VAPIDGDGDG DASGGGPSSN  600
SSACGNVPGG NERSGSSDGS SEGEATCNVD RQREAGKNGT SSSDPEAEEE ADEKVGRAAE  660
QFTFNEFLPV SKDGDKHEKP ETSSRLPRTV SIDGEQRKEV TERGQIAFQA LFKRDTLPRT  720
FSPPPGLALG TGTKEAAKQQ PSVSTMSRSL SANAITCDSL ELRTSQRNHK DQDSAFNTWN  780
HLRGTSSASK VDRCESGISI PSSRPTKSLE DLRSSERRRG SRKGRSHTGA NNWLQLWTDT  840
SSLDKDEDAD EDDEEDESAD SGADDGCKKQ QQKASFVCKL DMSISNQEVE LISDVEGTGA  900
SSLNISSTVR SQTLFLSVGT GGLKNAVSNV PTRTVKYSGV GFVPYQRAST RTEPLVDKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16227	0.0	gametophore\| protonema

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00654	PBM	Transfer from LOC_Os08g06110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB458832	0.0	AB458832.1 Physcomitrella patens PpCCA1b mRNA for circadian clock-associated protein 1b, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024372041.1	0.0	uncharacterized protein LOC112280611
TrEMBL	A0A2K1KXL0	0.0	A0A2K1KXL0_PHYPA; Uncharacterized protein
STRING	PP1S96_165V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	8e-35	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_37540V3.1.p