PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_6830V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 226aa    MW: 24720.2 Da    PI: 6.3565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_6830V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-2052102155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++  +g+Wv+eIr+p++   r r++lg+f tae+Aa+a++aa  +l+g
  Pp3c3_6830V3.1.p  52 PKYRGVRQRQ-WGKWVSEIREPKK---RSRIWLGSFPTAEMAARAYDAAVVCLRG 102
                       79*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1252102IPR001471AP2/ERF domain
CDDcd000182.16E-3652112No hitNo description
SMARTSM003809.9E-4153116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3353112IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2253112IPR016177DNA-binding domain
PROSITE profilePS5103223.93353110IPR001471AP2/ERF domain
PRINTSPR003671.4E-105465IPR001471AP2/ERF domain
PRINTSPR003671.4E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTIRMLVNAM VARSGSLRTA PDIGVESTQH CLGVVKEKNR FALKEGVNVA VPKYRGVRQR  60
QWGKWVSEIR EPKKRSRIWL GSFPTAEMAA RAYDAAVVCL RGPTASLNFP DSPPHGLPAC  120
QSPHDVQIAA AAAAAELSSP LSLPNPPVAL PLDVQLHIME SETKPSPELQ RIETKKADQL  180
GSDEIVSRSS ASDWFTPFED PWCSNHALED MGTSFTDFPY LEDII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1846110772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155290.0gametophore
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370011.11e-167ethylene-responsive transcription factor ERF038-like
TrEMBLA0A2K1KTK01e-166A0A2K1KTK0_PHYPA; Uncharacterized protein
STRINGPP1S296_32V6.11e-167(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.19e-30ERF family protein