PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_720V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 396aa MW: 45108.4 Da PI: 8.2078

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_720V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.3	3.9e-08	69	143	2	73
trihelix 2 WtkqevlaLiearremeerlrr..gk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 W++ e+ +L+ +r+ ++ ++ ++ + W+e++++++++ + rs k + e+w+ l++ y i+e+ +++++ Pp3c3_720V3.1.p 69 WSEAETIQLLLLRKAQLQNKEErrACpKGSSAWDEIASQLKDKFIPRSGKHVGERWDTLRRVYMDIEEHCSEHQK 143 ********9999655444431144266899**********************************9998854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.748	61	128	IPR017877	Myb-like domain
Pfam	PF13837	3.3E-10	67	144	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MITRSRVGGA SNMEASGDQG TVPLSMIPLL EVAYSKCQEE EKDGLEQRSS WNTKREPEGG 60 KKRKRSSNWS EAETIQLLLL RKAQLQNKEE RRACPKGSSA WDEIASQLKD KFIPRSGKHV 120 GERWDTLRRV YMDIEEHCSE HQKTYAEVLD ANRELFKFIP TEYTQKWHEL IADCKPGKRR 180 GKKTTEAVSS QKDLTSSLFT EAAPLKTGPV IEEYPMTSHK PSDESGSQGD VNLLKLDRAA 240 ADAAHIEYRP SESSPTLRAQ SSQIASAFDT LIKDIEHIFS RQRYQHNSSQ RCERTYARRT 300 RDCDERVDGN GVERMNDMCY SSKMNVVASL QSVLEALKSA SEFTSSDSYL LKIDKREWNI 360 VEHNMRAFSD RHKNNAQPRP RPEEKTNNSC ARNEL*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MITRSRVGGA SNMEASGDQG TVPLSMIPLL EVAYSKCQEE EKDGLEQRSS WNTKREPEGG  60
KKRKRSSNWS EAETIQLLLL RKAQLQNKEE RRACPKGSSA WDEIASQLKD KFIPRSGKHV  120
GERWDTLRRV YMDIEEHCSE HQKTYAEVLD ANRELFKFIP TEYTQKWHEL IADCKPGKRR  180
GKKTTEAVSS QKDLTSSLFT EAAPLKTGPV IEEYPMTSHK PSDESGSQGD VNLLKLDRAA  240
ADAAHIEYRP SESSPTLRAQ SSQIASAFDT LIKDIEHIFS RQRYQHNSSQ RCERTYARRT  300
RDCDERVDGN GVERMNDMCY SSKMNVVASL QSVLEALKSA SEFTSSDSYL LKIDKREWNI  360
VEHNMRAFSD RHKNNAQPRP RPEEKTNNSC ARNEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	65	KKRKRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16136	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369288.1	0.0	uncharacterized protein LOC112279264 isoform X1
TrEMBL	A0A2K1KST6	0.0	A0A2K1KST6_PHYPA; Uncharacterized protein
STRING	PP1S1_251V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c3_720V3.1.p