PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_8830V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 580aa    MW: 62980.1 Da    PI: 5.1488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_8830V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.1e-31352409158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       ++Dgy+WrKYGqK vk+s+fprsYYrCt ++Cpv+k+ver+a d  +v++tYeg+H h
  Pp3c3_8830V3.2.p 352 MEDGYKWRKYGQKAVKDSPFPRSYYRCTNQTCPVRKRVERKAGDAGLVVTTYEGTHSH 409
                       58*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31339411IPR003657WRKY domain
SuperFamilySSF1182902.62E-27344410IPR003657WRKY domain
PROSITE profilePS5081130.481347412IPR003657WRKY domain
SMARTSM007747.6E-36352411IPR003657WRKY domain
PfamPF031062.0E-24353409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSEMTREDDG EQPHVETNSS PEIDYLMRSL GEDVKLSNSP RRPGLKKRAA KPAKSPSSLT  60
VSPPPRDNST FFQPQQQQQQ SHPSPPPQFD VAIFMPSPTA PWIKFPPLLL SPQPVDTHGL  120
NLPNTTIGNP TPHQSVQLTA SPFDHLSTSN SDLLEPSPEY PWFPASQDAQ PATPNFTPLV  180
QLLNLSPVAT KVGERTLPTL STYSDGMVSM PASSRISSEA VGNQDGFTGQ GRLPSPTPSL  240
VGDVSPLNSP LTSTPNSPFD SPFDSPFGSE GGYFSDGGTL IDIVGVLESN TSSAKRKTPD  300
RALDESEDIQ PLDEPDPKKQ TTKKEKKGAV KLNKRVRVPR YAIHTRSEID VMEDGYKWRK  360
YGQKAVKDSP FPRSYYRCTN QTCPVRKRVE RKAGDAGLVV TTYEGTHSHL SPVTEAATVA  420
AASAKGSDGF NATLSEDSRP AAATCFPFQP VQERNMFDLT MQIQAGEIDL EAANRDLASV  480
AKTSNEESQP PPVGLHTHNS LYSDSHLPND SHILNQAQLD PDRLLELQGE IPASVVIPDP  540
QLGRSQLEMF DLSGQLSNTE SYVSLLGDIL QNSGPLHHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24342409774Probable WRKY transcription factor 4
2lex_A4e-24342409774Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896220.0DQ889622.1 Physcomitrella patens WRKY transcription factor 3 (WRKY3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371065.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371066.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371067.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371068.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371069.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371070.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371072.10.0WRKY transcription factor WRKY24-like
RefseqXP_024371073.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A2K1KTQ70.0A0A2K1KTQ7_PHYPA; Uncharacterized protein
STRINGPP1S140_87V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-34WRKY DNA-binding protein 57