PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_9330V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 103aa    MW: 11549.4 Da    PI: 10.8342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_9330V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-0917471345
                      HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      v++ ++lG++ W++Ia+++  gR ++++k++w 
  Pp3c3_9330V3.2.p 17 VHCLTKLGNK-WAKIASCLH-GRIDNDVKNFWS 47
                      56899*****.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.76E-41746No hitNo description
PfamPF002492.1E-61947IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-61954IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-102049IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MILFVYYKVR LSTGLKVHCL TKLGNKWAKI ASCLHGRIDN DVKNFWSTRQ KRILRALQRP  60
KMPSGSIDAS TDTQEFSLLS RRHVSAVGGQ NLPQVTLGEH ND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370343.12e-65probable transcription factor MYB58
TrEMBLA0A2K1KTU61e-70A0A2K1KTU6_PHYPA; Uncharacterized protein
STRINGPP1S140_150V6.12e-71(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-13MYB family protein