PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_9950V3.3.p
Common NamePHYPADRAFT_164645
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 563aa    MW: 62498.1 Da    PI: 6.552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_9950V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12354400455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ +I++Lq
  Pp3c3_9950V3.3.p 354 NHVQAERQRREKLNKRFYALRAVVPNV-----SKMDKASLLGDAIAHINHLQ 400
                       6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-13139IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.04E-14348404No hitNo description
SuperFamilySSF474591.57E-17350414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.393350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17354415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10354400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-17356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAGIQTILCV PIMNGVVELG STDAIHERLD VVEYVKMVFQ EPTWGLTNMS PIISQSQVGK  60
FDTTFMPHYP SIPFDSTSVS GVSSMTLNTD PGLADSESMD FGTRHSHMGK MVSHSGAFGF  120
NGYDHVWGQT NEFHYNDPLP DDNVERDLGQ PMCNILGSLP LQDEKLPLAS SPPPKTLDSD  180
SRYSIFQQNN VKKPPQLDHT QTSLPVTERL HPKPHTSQAF LHHNGSFDVG EMFNPPGHTQ  240
TVRSNPPSLD EQLHSPSMPA VEKLPIVEKP TSIYKPESVE KPMPVFKPLP QPPSPPASKP  300
AVPVPANGLL LAGHLDQECV DTELITMKNN VVEAPKVPRK RGRKPANDRE EPLNHVQAER  360
QRREKLNKRF YALRAVVPNV SKMDKASLLG DAIAHINHLQ EKLQDAEMRI KDLQRVASSK  420
HEQDQEVLAI GTLKDAIQLK PEGNGTSPVF GTFSGGKRFS IAVDIVGEEA MIRISCLREA  480
YSVVNMMMTL QELRLDIQHS NTSTTSDDIL HIVIAKMKPT LKFTEEQLIA LLERSCQNTG  540
YLRKREGSDR LLQRPDNSPQ LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24349407361Transcription factor MYC2
5gnj_B1e-24349407361Transcription factor MYC2
5gnj_E1e-24349407361Transcription factor MYC2
5gnj_F1e-24349407361Transcription factor MYC2
5gnj_G1e-24349407361Transcription factor MYC2
5gnj_I1e-24349407361Transcription factor MYC2
5gnj_M1e-24349407361Transcription factor MYC2
5gnj_N1e-24349407361Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370450.10.0transcription factor MYC4-like
TrEMBLA0A2K1KTX70.0A0A2K1KTX7_PHYPA; Uncharacterized protein
STRINGPP1S74_38V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-46bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]