PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_9970V3.1.p
Common NamePHYPADRAFT_164647
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 682aa    MW: 74670.1 Da    PI: 6.7357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_9970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12467512454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Pp3c3_9970V3.1.p 467 SHVQAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 512
                       7999**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.5E-4916163IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.31E-13461517No hitNo description
SuperFamilySSF474592.49E-17463529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.901463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17467528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9467512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MPVVLPTEYP SKYVCRMLGW GDGYFKGPKE NEISEKRIDQ GGSEEDQQLR RKVLRELQSL  60
VSNTEEDVSD YVTDTEWFYL VSMSHSFAYG VGTPGQALAT ESPVWLTEAN KAPNHICTRA  120
HLAKMAGIQT IVCVPTRTGV VELGSTDLIS QNMDVVHHIK MVFDEPFWGA NRSQVMAQSL  180
LMDSDATFFP PSPSIMSMGT TSAFASSPSV ASRGSTLGKD HESHYRGRNV SVEKIGSSMA  240
STSFDTLDYM WQQSDEMQFN DGVSVGTTEK DQGQSRLYYP VLGPPVLVEK LPFSATSLIS  300
RTRAAEVKHS SMLQNVEKLA SEDQKPSSLP HIKVHTTHSY PEKTGAGELS QVLSTPDLRQ  360
SIEMKLPAQV ETRRAPGITG GATKPVAEKA KPVPKPPQQQ QTAISGPPAS ASGRSSFDQS  420
EHDSFQESEA EISFKESSAV EFSLNVGTKP PRKRGRKPAN DREEPLSHVQ AERQRREKLN  480
QRFYALRAVV PNVSKMDKAS LLGDAIAYIN ELTSKLQSAE AQIKDLKGHV VGSSDKSQES  540
LSIARGSMDN STIDGLSIRP QGSVNSTSIS GNAPSGTKPT IAVHILGQEA MIRINCLKDS  600
VALLQMMMAL QELRLEVRHS NTSTTQDMVL HIVIVKIEPT EHYTQEQLCA ILERSCQPYS  660
CSTKDEGHGL SEKLGSSRRS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-301716446193Transcription factor MYC3
4rqw_B5e-301716446193Transcription factor MYC3
4rru_A8e-301715985227Transcription factor MYC3
4rs9_A5e-301716446193Transcription factor MYC3
4ywc_A8e-301715985227Transcription factor MYC3
4ywc_B8e-301715985227Transcription factor MYC3
4yz6_A5e-301716446193Transcription factor MYC3
5t0f_A5e-301715946188Transcription factor MYC3
5t0q_A5e-301715946188Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.116690.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370449.10.0transcription factor MYC4-like isoform X2
TrEMBLA0A2K1KTW40.0A0A2K1KTW4_PHYPA; Uncharacterized protein
STRINGPP1S74_41V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-41bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]