PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_9970V3.2.p
Common NamePHYPADRAFT_164647
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 753aa    MW: 82542.8 Da    PI: 5.92
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_9970V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-12538583454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Pp3c3_9970V3.2.p 538 SHVQAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 583
                       7999**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-6358234IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.03E-14532588No hitNo description
PROSITE profilePS5088816.901534583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17534600IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17538599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9538583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16540589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MVMMMETQVP SFWDAGDSAM IEAFMGPAYG IPSSYEVQDD LASTTEKGLE LSETVLLRRL  60
HTLVEETSSN WTYGIFWQLS RSPSGELMLG WGDGYFKGPK ENEISEKRID QGGSEEDQQL  120
RRKVLRELQS LVSNTEEDVS DYVTDTEWFY LVSMSHSFAY GVGTPGQALA TESPVWLTEA  180
NKAPNHICTR AHLAKMAGIQ TIVCVPTRTG VVELGSTDLI SQNMDVVHHI KMVFDEPFWG  240
ANRSQVMAQS LLMDSDATFF PPSPSIMSMG TTSAFASSPS VASRGSTLGK DHESHYRGRN  300
VSVEKIGSSM ASTSFDTLDY MWQQSDEMQF NDGVSVGTTE KDQGQSRLYY PVLGPPVLVE  360
KLPFSATSLI SRTRAAEVKH SSMLQNVEKL ASEDQKPSSL PHIKVHTTHS YPEKTGAGEL  420
SQVLSTPDLR QSIEMKLPAQ VETRRAPGIT GGATKPVAEK AKPVPKPPQQ QQTAISGPPA  480
SASGRSSFDQ SEHDSFQESE AEISFKESSA VEFSLNVGTK PPRKRGRKPA NDREEPLSHV  540
QAERQRREKL NQRFYALRAV VPNVSKMDKA SLLGDAIAYI NELTSKLQSA EAQIKDLKGH  600
VVGSSDKSQE SLSIARGSMD NSTIDGLSIR PQGSVNSTSI SGNAPSGTKP TIAVHILGQE  660
AMIRINCLKD SVALLQMMMA LQELRLEVRH SNTSTTQDMV LHIVIVKIEP TEHYTQEQLC  720
AILERSCQPY SCSTKDEGHG LSEKLGSSRR SQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-42502353193Transcription factor MYC3
4rqw_B9e-42502353193Transcription factor MYC3
4rs9_A9e-42502353193Transcription factor MYC3
4yz6_A9e-42502353193Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.116690.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370448.10.0transcription factor MYC4-like isoform X1
TrEMBLA9SFN90.0A9SFN9_PHYPA; Predicted protein
STRINGPP1S74_41V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-47bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]