PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_9970V3.4.p

Common Name

PHYPADRAFT_164647

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 565aa MW: 61543.5 Da PI: 7.5

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_9970V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	350	395	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Pp3c3_9970V3.4.p 350 SHVQAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 395 7999********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.1E-14	6	46	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	2.13E-13	344	400	No hit	No description
SuperFamily	SSF47459	1.96E-17	346	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.901	346	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-10	350	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-17	350	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-16	352	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MALHRMQMAG IQTIVCVPTR TGVVELGSTD LISQNMDVVH HIKMVFDEPF WGANRSQVMA 60 QSLLMDSDAT FFPPSPSIMS MGTTSAFASS PSVASRGSTL GKDHESHYRG RNVSVEKIGS 120 SMASTSFDTL DYMWQQSDEM QFNDGVSVGT TEKDQGQSRL YYPVLGPPVL VEKLPFSATS 180 LISRTRAAEV KHSSMLQNVE KLASEDQKPS SLPHIKVHTT HSYPEKTGAG ELSQVLSTPD 240 LRQSIEMKLP AQVETRRAPG ITGGATKPVA EKAKPVPKPP QQQQTAISGP PASASGRSSF 300 DQSEHDSFQE SEAEISFKES SAVEFSLNVG TKPPRKRGRK PANDREEPLS HVQAERQRRE 360 KLNQRFYALR AVVPNVSKMD KASLLGDAIA YINELTSKLQ SAEAQIKDLK GHVVGSSDKS 420 QESLSIARGS MDNSTIDGLS IRPQGSVNST SISGNAPSGT KPTIAVHILG QEAMIRINCL 480 KDSVALLQMM MALQELRLEV RHSNTSTTQD MVLHIVIVKI EPTEHYTQEQ LCAILERSCQ 540 PYSCSTKDEG HGLSEKLGSS RRSQ*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MALHRMQMAG IQTIVCVPTR TGVVELGSTD LISQNMDVVH HIKMVFDEPF WGANRSQVMA  60
QSLLMDSDAT FFPPSPSIMS MGTTSAFASS PSVASRGSTL GKDHESHYRG RNVSVEKIGS  120
SMASTSFDTL DYMWQQSDEM QFNDGVSVGT TEKDQGQSRL YYPVLGPPVL VEKLPFSATS  180
LISRTRAAEV KHSSMLQNVE KLASEDQKPS SLPHIKVHTT HSYPEKTGAG ELSQVLSTPD  240
LRQSIEMKLP AQVETRRAPG ITGGATKPVA EKAKPVPKPP QQQQTAISGP PASASGRSSF  300
DQSEHDSFQE SEAEISFKES SAVEFSLNVG TKPPRKRGRK PANDREEPLS HVQAERQRRE  360
KLNQRFYALR AVVPNVSKMD KASLLGDAIA YINELTSKLQ SAEAQIKDLK GHVVGSSDKS  420
QESLSIARGS MDNSTIDGLS IRPQGSVNST SISGNAPSGT KPTIAVHILG QEAMIRINCL  480
KDSVALLQMM MALQELRLEV RHSNTSTTQD MVLHIVIVKI EPTEHYTQEQ LCAILERSCQ  540
PYSCSTKDEG HGLSEKLGSS RRSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_B	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_E	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_F	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_G	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_I	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_M	1e-25	345	413	3	71	Transcription factor MYC2
5gnj_N	1e-25	345	413	3	71	Transcription factor MYC2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11669	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370448.1	0.0	transcription factor MYC4-like isoform X1
TrEMBL	A0A2K1KTW4	0.0	A0A2K1KTW4_PHYPA; Uncharacterized protein
STRING	PP1S74_41V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	4e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_9970V3.4.p
Entrez Gene	5928383

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]