PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_10850V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 727aa    MW: 80625.7 Da    PI: 7.2945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_10850V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407e-13181280198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d +g++W+++++++ ++++  y+++     +v++ +L+ gD+v F++ +  
  Pp3c4_10850V3.1.p 181 FDKVASVTDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDATGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVFFSRLE-P 270
                        667777778889999*************99999********************9877777768887.7999****************665.8 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        +++l+++ ++
  Pp3c4_10850V3.1.p 271 QGTLFIGYRK 280
                        8888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-19177285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-17179282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-11179280No hitNo description
PROSITE profilePS508639.319181282IPR003340B3 DNA binding domain
SMARTSM010191.8E-9181281IPR003340B3 DNA binding domain
PfamPF023623.0E-9183280IPR003340B3 DNA binding domain
PROSITE profilePS5105011.764469519IPR011124Zinc finger, CW-type
PfamPF074967.5E-8474516IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MLGGDFPTLS QSQVRHAQFS NHIGSTCGEE SMERRGTFHS FFGKSTPTQE GTTKKSSSAL  60
ASTLSTCQIP VLGHHVCDFN SVSKSPGGTS ILVGCVLGKA IVKPKQQIRG SVKRNPGEDR  120
KELLATSPLN NGPTLNGKGR TGILTFPRSI SVNGPRIGNL NSPPPSQKLF FSLGTTMTFL  180
FDKVASVTDC RSTGHFVLPK RKVEEHFPPI NKPGGIWMTL VDATGKEWSF EFCFWHSKES  240
RIYYFKKFYP YVQSTDLRGG DTVFFSRLEP QGTLFIGYRK QKPPPPKQMK ALNCGASKDQ  300
FKEREHSNGG LTYLANDWSP SLEEVATRQK KPTKLSADDA NVDYALDRGI IQRKKKRKKE  360
FPPLSLAQRT KVIDHLAVGE ALIDKKSTSG RSSTPDTFQH DDRIAGVLGS KGKRLRVNAD  420
EYAEWKEMQD LLRPAPGALP TVLTIEGHDF EEYEAPPVLI TRTYHSPEAH GENQWVKCND  480
CGSWRRLSAD AFVPAGWICS DSDLDQGRAY CNAPQELSDH EIHQLLGLGL DAGKYQCHLN  540
CVVFHISSKQ PDFLVIVYNE QEGRTETQED LNEDGDWTTP EHLYSAQADV CAYKQPTLWS  600
AAMALVDGSL HRGTESYSEL KSCESDTSVP EFTDHGPGMA LQSPRLKQFC DLIEDSSSRR  660
STFLETRGRK VYENPTDSDE FVDPAGAAKG YEIPRADCYD FLGPVGKVLT PRSEIQPVTQ  720
HPLTTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-2316728010123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351358QRKKKRKK
2352358RKKKRKK
3352359RKKKRKKE
4354358KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372586.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372587.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372588.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372589.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372590.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372591.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372593.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372594.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372595.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372596.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372597.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372598.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372599.10.0B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A2K1KMY40.0A0A2K1KMY4_PHYPA; Uncharacterized protein
STRINGPP1S227_33V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-52HSI2-like 1