PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_16540V3.3.p
Common NamePHYPADRAFT_175642
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 215aa    MW: 23270.2 Da    PI: 7.198
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_16540V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like331.4e-101233355
            G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                       +++m vkgLtl+h+kSHLQk+Rl
  Pp3c4_16540V3.3.p  1 MRVMAVKGLTLYHLKSHLQKFRL 23
                       789*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-9124IPR009057Homeodomain-like
PfamPF143792.3E-2466112IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRVMAVKGLT LYHLKSHLQK FRLGKQLHRD SSGHEGAKGG SADIQVTISA CSDGPSTPKP  60
QNQESFQISE AIRMQMEVQR RLQEQLEIQR QLQLRIEAQG KYLQSILEKA KEALGSHIGA  120
SPGLETVHAE LTELASKVNS EPMNMCFPPL TLPELPTQSA DARIGNLPRQ ESRVSDSSSQ  180
KSHVTNGAAN PEDSGGASAS CENQASIGIQ KFET*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.159350.0gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373739.11e-156protein PHR1-LIKE 3-like
SwissprotQ94A571e-40PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2K1KNR01e-154A0A2K1KNR0_PHYPA; Uncharacterized protein
STRINGPP1S13_270V6.11e-155(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.15e-24G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]