PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_23130V3.3.p

Common Name

PHYPADRAFT_163773

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 432aa MW: 47317 Da PI: 6.3281

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_23130V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	133	187	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWtpeLHe+Fv av++LGG+++AtPk++ +lm+v+g+t++hvkSHLQkYRl Pp3c4_23130V3.3.p 133 KSRLRWTPELHEKFVIAVAHLGGPDRATPKAVQRLMGVQGITIYHVKSHLQKYRL 187 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.082	130	190	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.4E-30	131	188	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-17	132	187	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	133	188	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	135	186	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-19	219	264	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MSFMFCDQDL LQPPEEEAAL PQEERPLAAV PMAEPETDLF GAGREWLIWN QLVPEEDVVA 60 SCWTQLIDVE QDDGKTLNHT IKYMPLQTPL QVEPVASRPP TTEQRPKSSS GATSAESPKP 120 SSSEAGTSGS ASKSRLRWTP ELHEKFVIAV AHLGGPDRAT PKAVQRLMGV QGITIYHVKS 180 HLQKYRLAKY MPEISEEAKA ERRKHDSLLT SLDLGSSYQI AQALQLQMEV QKKLHEQLEI 240 QRELQLRIEA QGQSLQKMLE QQAKLNHPDL PIGMPSSSTN TVVPTPSSLA LSDSSNTTTR 300 SEDQHAENSA VSTTLAHSQT TMDKIDQKQT EAGLTSNTLL TEPAAKRACH ETSSQVNLSG 360 QANNIVVPRT KPSYAWESPS PQVQRSSRTM QESQQLQTST AAGSPQKVPQ QAHAASISQH 420 PGRVAQKPVQ A*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MSFMFCDQDL LQPPEEEAAL PQEERPLAAV PMAEPETDLF GAGREWLIWN QLVPEEDVVA  60
SCWTQLIDVE QDDGKTLNHT IKYMPLQTPL QVEPVASRPP TTEQRPKSSS GATSAESPKP  120
SSSEAGTSGS ASKSRLRWTP ELHEKFVIAV AHLGGPDRAT PKAVQRLMGV QGITIYHVKS  180
HLQKYRLAKY MPEISEEAKA ERRKHDSLLT SLDLGSSYQI AQALQLQMEV QKKLHEQLEI  240
QRELQLRIEA QGQSLQKMLE QQAKLNHPDL PIGMPSSSTN TVVPTPSSLA LSDSSNTTTR  300
SEDQHAENSA VSTTLAHSQT TMDKIDQKQT EAGLTSNTLL TEPAAKRACH ETSSQVNLSG  360
QANNIVVPRT KPSYAWESPS PQVQRSSRTM QESQQLQTST AAGSPQKVPQ QAHAASISQH  420
PGRVAQKPVQ A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	133	190	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2695	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024372493.1	0.0	uncharacterized protein LOC112280843 isoform X1
TrEMBL	A9SA92	0.0	A9SA92_PHYPA; Predicted protein
STRING	PP1S60_59V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_23130V3.3.p
Entrez Gene	5926569

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]