PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_25130V3.2.p
Common NamePHYPADRAFT_126548
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 249aa    MW: 26713 Da    PI: 4.6669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_25130V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-203686155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aa+a++aa  +l+g
  Pp3c4_25130V3.2.p 36 PKYKGVRMRQ-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAALVCLRG 86
                       79*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.17E-353696No hitNo description
PfamPF008471.3E-123686IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-223796IPR016177DNA-binding domain
SMARTSM003803.7E-3937100IPR001471AP2/ERF domain
PROSITE profilePS5103223.1563794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-323796IPR001471AP2/ERF domain
PRINTSPR003671.2E-93849IPR001471AP2/ERF domain
PRINTSPR003671.2E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVEKNVGPDG RVTAARYNLS VTKKEFKTKE AKPASPKYKG VRMRQWGKWV SEIREPNKRS  60
RIWLGSFPTA EMAARAYDAA LVCLRGPTAS LNFPDSPPQA LPVCNSPKDV QVAAAAAAAA  120
AEPCTPVSLP AQPAAQSLEA QLNEMETETK ESESHDLEES SASSTANSSP STPGSITTLE  180
DVDLAFLADM DFIDLPPLEP FDINQSHQSS FPESAALTQG DNPPYCRVSS GPILATDLEL  240
YKLLYGVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1637941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374612.10.0ethylene-responsive transcription factor ERF039-like
TrEMBLA9SAK50.0A9SAK5_PHYPA; Predicted protein
STRINGPP1S60_269V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-31ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]