PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_2590V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 411aa    MW: 43659 Da    PI: 7.1606
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_2590V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-134488147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Pp3c4_2590V3.2.p 44 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 88
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-163894IPR009057Homeodomain-like
PROSITE profilePS5129415.4083993IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-64294IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-184291IPR006447Myb domain, plants
SMARTSM007175.3E-114391IPR001005SANT/Myb domain
PfamPF002493.7E-114488IPR001005SANT/Myb domain
CDDcd001673.18E-84689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNAASSEMLG VMVAGSTLSS IPPIPVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLEALQ  60
LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH VPPPRPKRKS VQPYPQKAPK  120
TAQVQVSDGL RTQAVQTESS YGTGSHKPPM TSTSPSISAW VQHSVSPNPS ISYDAPGIKS  180
EGEGVNLSAV RVPSNSISGS SPGGWPQHVL PASQVAPESC IRAAPDFAEV YKFIGSVFDP  240
GVSGHLRKLK EMSAIDRETV LLLMHNLSIN LASPDFEEHD AGEDSPSVSG QAGTLAPSTP  300
ILVSPRSGNS APTQHRASLL QAYADSTADA GTARRHSHDG GRVISASFTS CGVSPAPEVL  360
EPVSLGLPCT ALQPQSPVLT TKPESVYSIT SLPSLPAGLA GDESVDTWWT *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374226.10.0protein REVEILLE 3-like isoform X3
SwissprotQ6R0H01e-83RVE3_ARATH; Protein REVEILLE 3
SwissprotQ8H0W32e-83RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2K1KLY00.0A0A2K1KLY0_PHYPA; Uncharacterized protein
STRINGPP1S160_6V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-86MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]