PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_2680V3.1.p
Common NamePHYPADRAFT_173530
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 195aa    MW: 20761.7 Da    PI: 10.1137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_2680V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-205099255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aaka++aa+ +l+g
  Pp3c4_2680V3.1.p 50 VYKGVRKRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAAVCLRG 99
                      7*****887.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-3250109IPR001471AP2/ERF domain
SMARTSM003801.6E-3550113IPR001471AP2/ERF domain
PfamPF008471.0E-125099IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2150109IPR016177DNA-binding domain
PROSITE profilePS5103222.99850107IPR001471AP2/ERF domain
PRINTSPR003678.6E-105162IPR001471AP2/ERF domain
CDDcd000184.80E-2251109No hitNo description
PRINTSPR003678.6E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVEKIAVSSL HAKRGGNLLA SLKLNAYSIA KKSSSKLVKP VSLHSGSPKV YKGVRKRTWG  60
KWVSEIREPN KRSRIWLGSF PTAEMAAKAY DAAAVCLRGQ SVKLNFPDSP PQGVQRCTSP  120
RDVQAAAAAA AAACILPASA LPMVNHSVTP SFESTPLNSL HSSSGMSSDD EAEDIDRSHH  180
VTKFCSHVDV VPVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17511071572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.60680.0gametophore| protonema| sporophyte
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00656PBM25215497Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372564.11e-141ethylene-responsive transcription factor RAP2-1-like
SwissprotQ391271e-28TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A2K1KLY11e-139A0A2K1KLY1_PHYPA; Uncharacterized protein
STRINGPP1S480_12V6.21e-140(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-22ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]