PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_270V3.2.p
Common NamePHYPADRAFT_170896
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 664aa    MW: 72547.2 Da    PI: 7.8146
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_270V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-141497179
         trihelix  1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrtsessstc 79
                     rWt++e+ +L +a + +e++  + +       ++ +We +sk++r++g++rs  qC+++w++ l  +ykk++++++k+  + +s +
  Pp3c4_270V3.2.p 14 RWTRSETVVLANALKAREDEAHDVAsksavgTAGDKWENISKFCRSHGVTRSGAQCNSRWSKgLYLDYKKVRDWQRKE--GLESYW 97
                     8*********99888888887764323456699***************************9779************95..333345 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-71399No hitNo description
PROSITE profilePS500906.8061477IPR017877Myb-like domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEGGGEEEHA VGHRWTRSET VVLANALKAR EDEAHDVASK SAVGTAGDKW ENISKFCRSH  60
GVTRSGAQCN SRWSKGLYLD YKKVRDWQRK EGLESYWKMK EKKRRELKLP GALDEEVFNI  120
LVSFLDPDLK QTGTPESEVD SDRPLHAISS ALVVDKGVAE PQQTGPSVPA PGATPQHSGD  180
GVGSMSDFAR LQARATSGES LQSLKYKIGA PPGADQKPST SGQKRKRSSS ASPVGAPAST  240
DGRLESIDPL NIESVKPIHF NVPPPLDTPR FNELNVAQRS STLHWDGPPN LASLETRLGA  300
QSEAVWNRVR MLNEQVVEMV DISNQRLLAQ MQSLFTQVRL QLQVISAQMQ AHVHEATRSL  360
QAELQAILQA HTEQFFNQMQ AQYASGGSHS QGQAPPKDRS TQNGNCSGDK TPRQAVPDIQ  420
VDFSQLPVPL LEPVQIARDK ERVVRPWTGE PHSPAPRTNR LLPHIFDVQK MESMTASKSS  480
RLPPHISDVD RILRQQQGLP LPSSMPNWNQ ASFVISELDR VLGHKPGPLD IHMIPPAPGP  540
SKCTYVVNEF DRSLRQRQIA DVKMKAPLSP SSMGLNVASQ GPPVWSQGPI HGDVLALLSV  600
SGNPNQSIEQ SSGQDVEPNR RHQPASSDTV DGDETEGSGQ DVGASSQKMG ANQRGWRSRK  660
TTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.75590.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374106.10.0uncharacterized protein LOC112281624 isoform X2
TrEMBLA9TMR20.0A9TMR2_PHYPA; Predicted protein
STRINGPP1S267_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-17Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]