PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_27870V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 448aa    MW: 49665.6 Da    PI: 9.3572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_27870V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18298348255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr++  +gr++AeIrd s    r   + +lg+f+taeeAa a++ a+++l+g
  Pp3c4_27870V3.2.p 298 HYRGVRRRT-WGRYAAEIRDSS----RpgSHLWLGTFDTAEEAALAYDDAALRLRG 348
                        69****877.**********43....356*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-17297356No hitNo description
PROSITE profilePS5103222.708298356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-29298357IPR001471AP2/ERF domain
PfamPF008473.9E-12298348IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22298357IPR016177DNA-binding domain
SMARTSM003801.1E-33298362IPR001471AP2/ERF domain
PRINTSPR003673.6E-9299310IPR001471AP2/ERF domain
PRINTSPR003673.6E-9322338IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MFVLVCSSDH VGHVLWFVNA LKGRGIHGES PVNRALAWRG ETEGSLVDFL NLLLRSPSAS  60
EMEETMQMLT SFAEACNNNV QDYEWGLSFK NFFGDSNDEE NSALPRKFHR FGSLSSHGSA  120
SKSESPKCRS TRPLTIALPG HLDKDTKSLI FGDLESMFSR PSSPWSNKRV LCNNLSGPNM  180
CNPLPRGHYD SDSSYNKSDV DDMILVKSIE NGWARLSPNR SAGDVAFPAK NPEKELTSNS  240
QSIAATEEPV YVSESVASST METRRMTCTV PALKTRKNPN SASRCRKTGR PRQANLQHYR  300
GVRRRTWGRY AAEIRDSSRP GSHLWLGTFD TAEEAALAYD DAALRLRGSR ALLNFPLRAA  360
SGLNVQLLTT SRSKVSRKAV AADQVEAQNQ NQTDYPKKVE RRKRSKEIPQ LESDLFDVSK  420
HLRAIATPDV AEDSPRHGTV STPSTWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26294362169ATERF1
3gcc_A1e-26294362169ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374399.10.0uncharacterized protein LOC112281757
TrEMBLA0A2K1KQ680.0A0A2K1KQ68_PHYPA; Uncharacterized protein
STRINGPP1S115_154V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-16ERF family protein