PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_29470V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 91aa    MW: 10500.9 Da    PI: 5.8924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_29470V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.12.1e-162574252
                NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvk 52
                       p+GfrFhPtdeelv +yL  kv + + +    i+e+d++k+ePwdL+   ++
  Pp3c4_29470V3.3.p 25 PVGFRFHPTDEELVGHYLYGKVGRARSDQ--LIQELDLNKFEPWDLHlVLMH 74
                       89********************9999655..8**************833332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-141974IPR003441NAC domain
PROSITE profilePS5100516.8782490IPR003441NAC domain
PfamPF023653.7E-82566IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSLCEAVEQS SGDFSIRSNS YVRIPVGFRF HPTDEELVGH YLYGKVGRAR SDQLIQELDL  60
NKFEPWDLHL VLMHEHAHLK DIFEFRISPT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366292.17e-22NAC domain-containing protein 76-like
RefseqXP_024366293.17e-22NAC domain-containing protein 76-like
TrEMBLX5IAY92e-20X5IAY9_PHYPA; NAC transcription factor PpVNS7
STRINGPP1S102_187V6.14e-45(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.16e-15NAC domain containing protein 105