PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_29750V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 522aa    MW: 54055.1 Da    PI: 7.3941
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_29750V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.5e-0999125127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C +++rtG C +G +C+++H+p
  Pp3c4_29750V3.1.p  99 PGEPDCVYYMRTGLCGFGMTCRYNHPP 125
                        5789*********************96 PP
2zf-CCCH34.72.9e-11146170327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++Ck++H++
  Pp3c4_29750V3.1.p 146 HPECQYYLKTGTCKFGATCKYHHPR 170
                        689********************96 PP
3zf-CCCH38.61.7e-12193216427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C +++rtG CkyG +CkF+H++
  Pp3c4_29750V3.1.p 193 KECAYYMRTGSCKYGVTCKFHHPQ 216
                        68********************97 PP
4zf-CCCH37.44.3e-12346372127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++++tG Ck+G++C+++H++
  Pp3c4_29750V3.1.p 346 PGQPECQYYMKTGDCKFGSTCRYHHPK 372
                        5789*********************96 PP
5zf-CCCH375.5e-12393417226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        + ++C+f++r+G+Ck+G++CkF H+
  Pp3c4_29750V3.1.p 393 GNPPCSFYSRYGICKFGPTCKFDHP 417
                        669*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.96298126IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-598125IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6100125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727143171IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-9146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6146172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4149171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-6188217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479189217IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5191216IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10193216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5195215IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657345373IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9347372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6349374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4351371IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6391418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887391419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5395418IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9395417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEFFAPAKGA PSSFAAGLEA PSASDIAPGS GLQLYDDWGG HSQHAGGAQR SPPEGGSGSS  60
ISVLDAVGAS HSSGEAGWAM AMQGQEGVDG GQGPYPERPG EPDCVYYMRT GLCGFGMTCR  120
YNHPPNRKLA AAATRGKGEY PERVGHPECQ YYLKTGTCKF GATCKYHHPR EKAGSTGRVH  180
LNVLGLPLRL EEKECAYYMR TGSCKYGVTC KFHHPQPATV GGMVPLPFGS GGGPSSPAPQ  240
HYPPGGVPSW PLTRSPFPLP RMQAPSSYGT MMPLQQGIMS MAGWNYQGPV GPAEGHQQGY  300
VFGGAPQGEH VSGYGPYMQG SSAVGLPAHQ ATQAVGGQET VFPERPGQPE CQYYMKTGDC  360
KFGSTCRYHH PKDRATPSPT CHLSPMGLPL RPGNPPCSFY SRYGICKFGP TCKFDHPLGG  420
SLTYSPSAGS LTDLPVAPYP VGSSPMNLAP SGYSEVPVER QDAVEGGGYG EDGSSGGHHR  480
VGRGNSEAAT ASPPTVGEGG GGVGGSGSGS GSTQAESVSK S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-131ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1KQG90.0A0A2K1KQG9_PHYPA; Uncharacterized protein
STRINGPP1S102_155V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-122zinc finger protein 1