PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_370V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HB-PHD
Protein Properties Length: 688aa    MW: 74291.8 Da    PI: 4.4931
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-095205601353
                      HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      e+L      nr ps++++eeLA klgL+ +qV  WF+N+R 
  Pp3c4_370V3.1.p 520 EALRCILDVNRLPSKSRKEELAIKLGLSFSQVHGWFKNQRH 560
                      566666677999***************************96 PP
2PHD41.23.7e-14187242151
                      SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C+++++  +++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C++k
  Pp3c4_370V3.1.p 187 FCAKCKSQEAlpDNDIILCDGaCNRGFHQYCLDPPLATEDIPPGdeGWLCPVCDCK 242
                      699****55455********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.08E-15177245IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-13183242IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941185242IPR019787Zinc finger, PHD-finger
CDDcd155042.63E-32187239No hitNo description
SMARTSM002498.8E-10187240IPR001965Zinc finger, PHD-type
PfamPF006281.2E-11187242IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590188239IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.6E-11501559IPR009057Homeodomain-like
PROSITE profilePS5007112.681505565IPR001356Homeobox domain
SuperFamilySSF466893.46E-11507568IPR009057Homeodomain-like
SMARTSM003898.2E-10507569IPR001356Homeobox domain
CDDcd000862.75E-10508565No hitNo description
PfamPF000461.6E-6519560IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MVPTGVVERE DQPEPAAAPP VPVITPKTLR SHSIRTQTTP GDGDAGADHA PGAVAAAAAS  60
AGGGGAADVM QGNDAGQERR GRRRGRRKKS DVPLDNPTRI LKHVKYLLIK MRVHQNLLDA  120
YTGEGWKGQS REKIRPEQEL QRAKAQILRS KLAIREAIHE LDDVGLEGSL DKNAFDSEGR  180
IYHEEIFCAK CKSQEALPDN DIILCDGACN RGFHQYCLDP PLATEDIPPG DEGWLCPVCD  240
CKMECIEAIN SYFGTSFEVE NSWESFFSNE AGIAAGGGTQ EGAGGDWPSS GDEDDEYDPE  300
TAEGPSSASE SGAQVIGLAV DWPSSDDEDH DYDPEAAEEP PGASGSGTQT VGLDVDWPST  360
DDEDDDFDPE GLRRGDPQAA VSAADEEAVI IAGKRHRKAV DYKRLHDEMY GKAEADNDDD  420
VISEDEDWGP ERRRRRTIPD DPNSPRSRIR GRKVRTPSGD ISKGADADLP SGLPDMPSHF  480
PTGSQGEVGS PQDIPALDGA ADSPGGEKRM WRRLPDSAVE ALRCILDVNR LPSKSRKEEL  540
AIKLGLSFSQ VHGWFKNQRH QALRKGLACP KRIHPVASSS RDFNTVESPS SVATLTESTL  600
PQKENAPNSI LTEKLDEVQV RLLELKQALD DFTKNAAVVA DGGSIELDNN VENGGIGLPE  660
NGKRVVYVPV VADVREQSPM STHTSAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRGRRRGRR
2431436RRRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85760.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372275.10.0pathogenesis-related homeodomain protein-like
TrEMBLA0A2K1KLN50.0A0A2K1KLN5_PHYPA; Uncharacterized protein
STRINGPP1S55_45V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-71pathogenesis related homeodomain protein A