PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_3920V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 432aa    MW: 47236.8 Da    PI: 4.7143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_3920V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11362407655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR +i +++ +L++l+P+     ++  + a++L  AveY+k+Lq
  Pp3c4_3920V3.4.p 362 SIAERVRRGKISERMKKLQDLVPSM----DRQTNTADMLDDAVEYVKQLQ 407
                       689*********************7....699*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17355425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.761356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-12360411No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17361428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-15362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGSVDDVLTV MLSDDHDPSS LAAVKTSSNS PFRLPNDMFA LLPYSSSLQG SLSGSGQQLG  60
SSKGTNFPRK GLGRSLAQIP EWPFPKDEKW GLDVLQEPDL TRATNFSPNV IAPQNMKTSR  120
QGGLQRYHSA PSSFLQCLDD FINEPGAYPQ ASSPLPDSDG LLTWADNLAP IMERCSQQMD  180
TEKILPSSEL NDYEEFIATL TDFSTTSRPP ESQKLDSKES LIRQDGLGGF TLPAIQDNME  240
ESSDVTFQMP GFLPQCESMP GPTSEKNGAT NNSKSSTYTP EECTYLVKEP AVSGGLWNCP  300
TNPARVGEAG PKLGGLIRHS SLPAPSRPFS GNVDFDDLFA DPSAVPLKTI RANRGHATHP  360
RSIAERVRRG KISERMKKLQ DLVPSMDRQT NTADMLDDAV EYVKQLQQQV QELSKTVAEL  420
QQLQERLGRR D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.103470.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374698.10.0transcription factor bHLH122-like isoform X2
TrEMBLA0A2K1KM470.0A0A2K1KM47_PHYPA; Uncharacterized protein
STRINGPP1S273_40V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-30bHLH family protein