PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_6000V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 698aa    MW: 76231.1 Da    PI: 7.1771
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_6000V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.4e-41229306178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cq+egC+adl+ +k+y+rrhkvCe+hsk+p v+v g++qrfCqqCsrfh+l efD++krsCr+rLa+hn+rrrk+q+
  Pp3c4_6000V3.1.p 229 TCQAEGCKADLNVTKNYYRRHKVCEFHSKTPIVIVGGHTQRFCQQCSRFHRLGEFDDGKRSCRKRLADHNRRRRKAQP 306
                       6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-34222291IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.966227304IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-38228307IPR004333Transcription factor, SBP-box
PfamPF031102.0E-30230303IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MIRQTRENIS DSRSIENLRF HQVSTAQRQG DPNWATENWD HSGAVGGLDQ ASRQYSGANG  60
SEWEWDPMIL AQHHGSGGSI DGSDGDHKHK ISVGTMSSLQ APRDMPSAGV PSNFAHSPMC  120
IFSSAGIQNL GFLDGSGQPP ITANLHSTLE SSGKPGLAAT NGTSLHSDIR SYDQRRCEFS  180
AASMHDHHIK REKIVLNLGV RTYFSNQDAA VGRLSKRHRV GSPGSQLPTC QAEGCKADLN  240
VTKNYYRRHK VCEFHSKTPI VIVGGHTQRF CQQCSRFHRL GEFDDGKRSC RKRLADHNRR  300
RRKAQPNAPT SGGISAESTS AIKVGDDGEL HTSFSRLNDP KSMLDMYLEK KCGCPSFLTL  360
EDTNEKLDSA GYKLKLRTSD LDFCRSPRDD HRSSYPGMSM NSQLMTCSEA QASLSALSFS  420
LPGPFPEHKP QRQLTMLAVT EEYDRGNSVY QHHMQGVGGS QSGPNLSLSS PRDQQGLQGR  480
GRRRPMSGQS CNGTEHPVHW LRPINANSDN MTQVVSRQGA MRMQALLPTE TKSGITSASA  540
NSSNSQEHDV EAFSPINQNL LPQGSSDLSS PDWMSVSMRE AQTSRSDFSR FGPSTPMSNL  600
LGSDQLQAVD QMLDLIGTSN QADANPGNDG CSQNVLARNA QMEYLQQKDT GTDSGGDDSS  660
WGGSCTVDSP DLKYSDLQPL RPGSYGTPTY DSHQDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-27221303184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164940.0EF016494.1 Physcomitrella patens SBP-domain protein 9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372366.10.0uncharacterized protein LOC112280779 isoform X1
TrEMBLA0A2K1KMD10.0A0A2K1KMD1_PHYPA; Uncharacterized protein
STRINGPP1S337_52V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.19e-43squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Riese M,H
    Comparative analysis of the SBP-box gene families in P. patens and seed plants.
    Gene, 2007. 401(1-2): p. 28-37
    [PMID:17689888]