PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_6870V3.12.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 393aa    MW: 41818.7 Da    PI: 6.5834
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_6870V3.12.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like353.1e-11346371126
            G2-like   1 kprlrWtpeLHerFveaveqLGGsek 26 
                        k+rlrWtp LHe+Fv av++LGG+++
  Pp3c4_6870V3.12.p 346 KARLRWTPALHEKFVAAVAKLGGPDR 371
                        68**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-9345372IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-8346377IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCVVASMAPI SSASASHVPA SQSCVAGASE ECVAPLARFV SRQEDGTSLS LNRAQSISEV  60
FGGSQVISPK ASSGQSFFVA PQGFHEDYDL QYVVNVAMAS HEHGSRQQVP ILADSASELK  120
SPEWSHRNEH NNSQFREPNC APPWQGAPSA IETSNVLAPG SPPSLALTHS QGETLSLPLQ  180
AETNPLWNCP YTQFAKPASE SALRKPSPMM PVAVSDFVSS QEATAKVPAA TTNTRLDSFQ  240
VLLAEASSSQ QPDGSNLSQP VKSPILKSEW ETSGWPHLIH RREMANPPDM LQEPSIAPQT  300
VASSPLLSTQ HPQAEQSQRS TVATSGGSPG PSIEATPMFS AAEVAKARLR WTPALHEKFV  360
AAVAKLGGPD RKRIAAFVYS TLIPYRSYRS NA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373848.10.0uncharacterized protein LOC112281493 isoform X3
TrEMBLA9SZS20.0A9SZS2_PHYPA; Predicted protein
STRINGPP1S143_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.18e-08G2-like family protein