PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_10960V3.3.p

Common Name

PHYPADRAFT_170820

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 203aa MW: 23388.6 Da PI: 10.6081

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_10960V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	5.8e-15	75	124	1	47
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaai 47 +++kGVr+ +k++rWv+eIr + + ++k+++lg+fgt+eeAa+a + Pp3c5_10960V3.3.p 75 PRFKGVRQLEKTKRWVSEIRPtVGLyTKqRKKKIWLGSFGTPEEAARAFD 124 689***************96633555666**************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.9E-10	75	122	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.01E-11	76	140	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.4E-15	76	143	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.278	76	142	IPR001471	AP2/ERF domain
SMART	SM00380	7.9E-11	76	146	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGEAKVEDVE MNKEKKKKGS KWKGLGGFTN AWSNFKWAIR EARIKHFENL ISVGLPGEVN 60 LIMFDEIEER PKPPPRFKGV RQLEKTKRWV SEIRPTVGLY TKQRKKKIWL GSFGTPEEAA 120 RAFDVGVYLW KDDLSVENFN FPDSPEFLRM LEPNRDTLDE KTRTARTKSL AQRAADRAAA 180 ARDFGSMSRS RRHDTRDQER GS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12807	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375467.1	1e-147	ethylene-responsive transcription factor ERF010-like
Refseq	XP_024375468.1	1e-147	ethylene-responsive transcription factor ERF010-like
TrEMBL	A9TM60	1e-145	A9TM60_PHYPA; Predicted protein
STRING	PP1S263_49V6.1	1e-146	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	3e-12	ERF family protein

Link Out ? help Back to Top
Phytozome	Pp3c5_10960V3.3.p
Entrez Gene	5942920

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]