PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_11150V3.1.p
Common NamePHYPADRAFT_94562
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 201aa    MW: 23102.2 Da    PI: 10.7812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_11150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.4e-11100143148
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 
                        sgy+G+r +k   +Wv+e r   +    + k+ +lg+++t++eAa a++a
  Pp3c5_11150V3.1.p 100 SGYTGIRLRKD--KWVCEMRIsET----TeKKMWLGSYDTEKEAALAYDA 143
                        89*****9985..********442....36**********99******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-6100143IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-11100158IPR016177DNA-binding domain
PROSITE profilePS5103212.615101159IPR001471AP2/ERF domain
SMARTSM003802.1E-4101165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-14102159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MLQRRRSDWG IVLTMLSAYS KSSRIGRQFR ERRTESVRIS TASIFSAVSM MFDSSTQCTS  60
TARWIHRSSP NTLWQAEITP ASSSRTPGTP RRALTLRSTS GYTGIRLRKD KWVCEMRISE  120
TTEKKMWLGS YDTEKEAALA YDAGLHHCST RRVKQYNFSS SPRLLGPQAR LEHLSSVDRR  180
FIVKVIAEEY ARNYYTRDIE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375416.12e-62uncharacterized protein LOC112282244
RefseqXP_024375417.12e-62uncharacterized protein LOC112282244
TrEMBLA0A2K1KJ981e-144A0A2K1KJ98_PHYPA; Uncharacterized protein
STRINGPP1S263_66V6.11e-107(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-11ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]