PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_1140V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 365aa    MW: 40339.1 Da    PI: 5.4073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_1140V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10154196754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + Er+RR+++ +++  Lr l+Pk      +K++K++iL  A+e++++L
  Pp3c5_1140V3.3.p 154 ISERKRREKLQKSLLDLRALVPKI-----TKMDKVSILSDAIEHVQDL 196
                       67*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.706147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14152207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-8154196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-14154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-12154201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAHNPRKLDM WNSYQVTGSA KSEEFDKCNG MPRTLSAGLQ AAWEQLERTG LHDPLSVVHY  60
ERLDAIGTGT ASRHDSGQVG EIQSGYNGIY FDEIPEALPS HHSDFTSINR NPSVTASQLN  120
GASPDLDTEM NSEPEKKRGR RKFPEGWVAS KNLISERKRR EKLQKSLLDL RALVPKITKM  180
DKVSILSDAI EHVQDLKQKV EMLENLSTTV EDGSIDQATA ECSKSSGSNL EVSEADDEGH  240
NQYHASEDAS CSARCDYQSN SSSQDWAMHQ VSHTFLAQLD VTKLEHGLYK LNFTCKQQPG  300
VLVQLSQAIE AFVIEIVHTN IVVITPTKVT CSFVVKMSSW NVMAVTDVEA DIKQLLGQSG  360
LLFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139159RRKFPEGWVASKNLISERKRR
2155160ERKRRE
3156161RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375135.10.0transcription factor NAI1-like isoform X3
RefseqXP_024375136.10.0transcription factor NAI1-like isoform X3
RefseqXP_024375137.10.0transcription factor NAI1-like isoform X3
RefseqXP_024375138.10.0transcription factor NAI1-like isoform X3
TrEMBLA0A2K1KHZ50.0A0A2K1KHZ5_PHYPA; Uncharacterized protein
STRINGPP1S72_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-14bHLH family protein