PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_12130V3.1.p
Common NamePHYPADRAFT_93078, WRKY35
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 590aa    MW: 65178.7 Da    PI: 8.1547
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_12130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.78.6e-22349407259
                        --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++ W+KYG K++++s++ r+YY+C+ ++C++kk v+ +++dp v+eitY g+H+++
  Pp3c5_12130V3.1.p 349 DDGHRgWKKYGNKSIQNSNHCRGYYKCSVKECRAKKMVQPTDKDPMVFEITYVGKHTCS 407
                        688866***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-23343407IPR003657WRKY domain
SuperFamilySSF1182903.79E-20347407IPR003657WRKY domain
SMARTSM007746.4E-24348408IPR003657WRKY domain
PfamPF031061.4E-19349406IPR003657WRKY domain
PROSITE profilePS5081116.329355409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEGIGNLVRQ GSMSRLRGSQ WTSEHCVLKV EEMLSKAIVH QEDLLRMLTS NLPDCLAGSQ  60
DGSPHMAPVA ITDVIYPSVL VSLKSKVENS MDWCQLALCR LREIVLHTSS LARSPTAQHS  120
TGSSVGSGHL PLFPKGSDAE SAAVQLRGNH AHSLSRLCVP TPLSPLKALR KEPLVPHSFA  180
VQDRNCSAWK AGNRLSHDYF APQLNKPPSV PPGEDSSSPK GQHQQRRNSA RLPASMHMAV  240
SDWPTTLSDT GSPIHSASVP RSLPSNPQQC SPSYHMSNVA LEPSLDGAEV MDYKNQSIAE  300
DQSYFNKLPR ENRTRNSFRK SEVRKFSGNE AKVEVVLQRL NGNKKGIPDD GHRGWKKYGN  360
KSIQNSNHCR GYYKCSVKEC RAKKMVQPTD KDPMVFEITY VGKHTCSSTG YKRNRSTRGS  420
AGSPAQLESI QDHLQGHDKP GVTMDDKLTT FQDSHISSTD CKKRSNVEMD QVENSRIWTG  480
SNSVDGGLTE PLHGSPSGKR VRRSKDDKDC PDNYSYMNNM AISTITTASE DREQAVEDED  540
GSLDTYLHQS SRHHQAVYWF QESLSWADFD IEGNLSTGQK SVNIDNHSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375490.10.0uncharacterized protein LOC112282291
TrEMBLA9TI670.0A9TI67_PHYPA; Transcription factor WRKY35
STRINGPP1S236_15V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-17WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]