PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_12130V3.2.p

Common Name

PHYPADRAFT_93078, WRKY35

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

WRKY

Protein Properties

Length: 378aa MW: 42213.3 Da PI: 7.5926

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_12130V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	69.6	4.5e-22	148	206	2	59
--SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++ W+KYG K++++s++ r+YY+C+ ++C++kk v+ +++dp v+eitY g+H+++ Pp3c5_12130V3.2.p 148 DDGHRgWKKYGNKSIQNSNHCRGYYKCSVKECRAKKMVQPTDKDPMVFEITYVGKHTCS 206 688866***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-23	142	206	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-20	146	206	IPR003657	WRKY domain
SMART	SM00774	6.4E-24	147	207	IPR003657	WRKY domain
Pfam	PF03106	7.7E-20	148	205	IPR003657	WRKY domain
PROSITE profile	PS50811	16.329	154	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEQARLCWCD AGEDSSSPKG QHQQRRNSAR LPASMHMAVS DWPTTLSDTG SPIHSASVPR 60 SLPSNPQQCS PSYHMSNVAL EPSLDGAEVM DYKNQSIAED QSYFNKLPRE NRTRNSFRKS 120 EVRKFSGNEA KVEVVLQRLN GNKKGIPDDG HRGWKKYGNK SIQNSNHCRG YYKCSVKECR 180 AKKMVQPTDK DPMVFEITYV GKHTCSSTGY KRNRSTRGSA GSPAQLESIQ DHLQGHDKPG 240 DSHISSTDCK KRSNVEMDQV ENSRIWTGSN SVDGGLTEPL HGSPSGKRVR RSKDDKDCPD 300 NYSYMNNMAI STITTASEDR EQAVEDEDGS LDTYLHQSSR HHQAVYWFQE SLSWADFDIE 360 GNLSTGQKSV NIDNHSS*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEQARLCWCD AGEDSSSPKG QHQQRRNSAR LPASMHMAVS DWPTTLSDTG SPIHSASVPR  60
SLPSNPQQCS PSYHMSNVAL EPSLDGAEVM DYKNQSIAED QSYFNKLPRE NRTRNSFRKS  120
EVRKFSGNEA KVEVVLQRLN GNKKGIPDDG HRGWKKYGNK SIQNSNHCRG YYKCSVKECR  180
AKKMVQPTDK DPMVFEITYV GKHTCSSTGY KRNRSTRGSA GSPAQLESIQ DHLQGHDKPG  240
DSHISSTDCK KRSNVEMDQV ENSRIWTGSN SVDGGLTEPL HGSPSGKRVR RSKDDKDCPD  300
NYSYMNNMAI STITTASEDR EQAVEDEDGS LDTYLHQSSR HHQAVYWFQE SLSWADFDIE  360
GNLSTGQKSV NIDNHSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	4e-12	148	205	9	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375490.1	0.0	uncharacterized protein LOC112282291
TrEMBL	A9TI67	0.0	A9TI67_PHYPA; Transcription factor WRKY35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	2e-17	WRKY DNA-binding protein 46

Link Out ? help Back to Top
Phytozome	Pp3c5_12130V3.2.p
Entrez Gene	5941510

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]