PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_19550V3.3.p
Common NamePHYPADRAFT_165664
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 210aa    MW: 24126.5 Da    PI: 10.8095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_19550V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.4e-11102144150
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                        +  +GV++  k+ +W A I++      +k+++lg+  + eeAa+++++a+
  Pp3c5_19550V3.3.p 102 CVMRGVYF--KNMKWQAAIKVE-----KKQVHLGTVNSQEEAARLYDRAA 144
                        568***99..47*********6.....6********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.981159IPR001471AP2/ERF domain
PfamPF008474.6E-5102144IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-8103146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-7105149IPR001471AP2/ERF domain
SMARTSM003802.5E-4105160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVSIRKRRQG GLSPDNTNRP QVYKASSYPR PTAVSASYPN TKKDLPLKQE VGVSRFRFAT  60
PPPLPSFQDV HQLLNPASLP KERELKKRKW QRRKHQENQE ACVMRGVYFK NMKWQAAIKV  120
EKKQVHLGTV NSQEEAARLY DRAAYLRGRE PNFELTEAEK QELQLLQWEE FLEQTRQAIL  180
SKKRKRGTSN ASGQNTEAVV SPKSFKCSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17988PKERELKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.4170.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375016.11e-154ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024375017.11e-154ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024375018.11e-154ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024375019.11e-154ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2K1KKB11e-153A0A2K1KKB1_PHYPA; Uncharacterized protein
STRINGPP1S93_77V6.11e-154(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.29e-20ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]