PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_19860V3.2.p
Common NamePHYPADRAFT_165670
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 612aa    MW: 65373.9 Da    PI: 6.1963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_19860V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-06534577755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ r RR++  +++  L++l+P+      ++l+ + +L ++ eY++ Lq
  Pp3c5_19860V3.2.p 534 IAARTRREKFTDRIRILQSLVPNG-----ERLDTVHMLSQTFEYVRFLQ 577
                        5679******************96.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-7520580No hitNo description
PROSITE profilePS5088812.881527576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-10530587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9532589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8533582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MVARVEDCFL GREQGFGLSK FSWKWSQGSN QVAQCLRDGD VQHSNSFYDA SRSGDLPTWS  60
SNPSGMQGFT KGLHNVHYGV QPHHFLNATV VPESDQNDSV LNSNHGSSYV AARNQVANAI  120
TLAPGRAGVN SLAPGLARNP SFESINNTGS CSTPSFGVGS PETVFPAHPS DLGSRDSSDM  180
MLRNRDQLTV GAYPESKVQP QLSDSQSNDS LSYGSQDAIV NCVDDFWSPQ EAIDAVLPDF  240
RLEAMPDEIS DTGACGLSFS DGQLGSLVST HHGHSTGDTG PYNYFRRGSE LAASLSTMAH  300
AAPAPDFCQS FLVGGVDDSE NPMIGNSVNL STRPSQLSIP PKLSSQAVFN GSPDHPGRLC  360
WSHQPWSSSQ HTSGSGSLDY IKQHNITSPT SLAGSSPSSP TTPLDQHLFA SSTLQGTSPV  420
GNISSVLKAD EIQKKLAELI GANSNKRSFS AMLGTCAAGT AYGGSSASGG KETSLSLPSL  480
GQGGANTDKF DAAALSALLY SNSPADQDFR SNFASPPAPK QRRRHGTATD PQSIAARTRR  540
EKFTDRIRIL QSLVPNGERL DTVHMLSQTF EYVRFLQHKV WDLYNNKDSI SEVKCEKWKE  600
FVDATTGQVI V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.144790.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375879.10.0uncharacterized protein LOC112282486
TrEMBLA0A2K1KKC30.0A0A2K1KKC3_PHYPA; Uncharacterized protein
STRINGPP1S93_114V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.17e-16LJRHL1-like 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]