PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_26440V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TALE
Protein Properties Length: 634aa    MW: 71953.6 Da    PI: 5.5291
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_26440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.8e-084815142154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++e+e+L +++gL+ +qV +WF N+R +
  Pp3c5_26440V3.1.p 481 KWPYPTEDEKERLIQETGLELKQVNNWFINQRKR 514
                        569*****************************87 PP
2ELK27.95.4e-10435456122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK +L+++Y+ +++++++E++
  Pp3c5_26440V3.1.p 435 ELKYELKQGYRARIVDVREEIL 456
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.3E-18267311IPR005540KNOX1
PfamPF037903.7E-13273308IPR005540KNOX1
SMARTSM012569.7E-25322379IPR005541KNOX2
PfamPF037914.4E-14331378IPR005541KNOX2
PfamPF037891.1E-5435456IPR005539ELK domain
PROSITE profilePS512139.673435455IPR005539ELK domain
SMARTSM011880.0069435456IPR005539ELK domain
PROSITE profilePS5007111.774455518IPR001356Homeobox domain
SuperFamilySSF466892.69E-16457522IPR009057Homeodomain-like
CDDcd000862.39E-11457519No hitNo description
SMARTSM003895.5E-10457522IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-25462518IPR009057Homeodomain-like
PfamPF059203.3E-17475514IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MMAFNNLSHD VSLQQFPELW ESSRFSQRHD TLDADQHTQG FDDTQFPKEP LEPNTNLHQV  60
AMEIQPNATI IGDESSRGRN PVVNESDDRE DDNHLLGTED GIVKNGRTWL NSALLREQNQ  120
ASEDRSGYGD HNAAERWCPV CSASGSQSCM CGMPMHAGDS STISFPNQST YTHWLSMQGA  180
NMLASQHRTG GEVDAKAAGF TVSPQSTKMA TELNLSPAGH GRDNHALFTD PRHSVAQGGS  240
RYAEDYERTE HQTDWEGATQ KMEWEQARDK FLIVAHPLYP DLLNAHASCL RVGTPVDQLP  300
HIEAQLTQAR HVTSKYSVLH PDHLEITEDE KTELDQFMAQ YIMLLCSFKD HLQQHVYYDV  360
TEAMMSCWEL EQALHNLTGV SAGESTGATM SEEDEDYDSD YGAYDAHMDP QDSGGFGPLV  420
PTESERTLME RVRQELKYEL KQGYRARIVD VREEILRKRR AGKLPEGTTT VLKAWWQAHS  480
KWPYPTEDEK ERLIQETGLE LKQVNNWFIN QRKRNWHSNP LSSSSELKSK RKNFSHELSD  540
KVICCYVDGT SARINWILQI REREFANKST HTHTCKRKFT SFWCTSARSK KTTGDSLNLS  600
RLVVFQTCDH QADCFNARTL DDELLLKSQA SST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13458522872Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2851480.0AF285148.1 Physcomitrella patens class 2 KNOTTED1-like protein MKN1-3 (MKN1-3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375368.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024375369.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024375370.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024375371.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024375372.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024375373.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_024375374.10.0homeobox protein knotted-1-like 3 isoform X1
TrEMBLA0A2K1KL610.0A0A2K1KL61_PHYPA; Uncharacterized protein
STRINGPP1S154_83V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-117KNOTTED1-like homeobox gene 3