PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_27150V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 340aa    MW: 38155.6 Da    PI: 4.3438
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_27150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-1884137356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t +q++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Pp3c5_27150V3.1.p  84 KKRRLTFDQVRSLEKNFEIENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWK 137
                        45578999*********************************************9 PP
2HD-ZIP_I/II119.71.5e-3883174192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ +qv++LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L   y++lk++ + + +e+++L+ee++
  Pp3c5_27150V3.1.p  83 EKKRRLTFDQVRSLEKNFEIENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSLDYNQLKNKFDDVVQEKQQLQEEMD 174
                        69*************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-1971141IPR009057Homeodomain-like
PROSITE profilePS5007117.7579139IPR001356Homeobox domain
SMARTSM003896.7E-1582143IPR001356Homeobox domain
CDDcd000861.29E-1684140No hitNo description
PfamPF000461.5E-1584137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1986146IPR009057Homeodomain-like
PRINTSPR000318.4E-6110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000318.4E-6119135IPR000047Helix-turn-helix motif
PfamPF021838.6E-14139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MASTVSGYGG PNVMLVRNES STDTLVAMLA SCSSVQLQVQ LAGGGLEDAV ASCSQKRPYY  60
SSFEASGEDP GDEEIEDCTQ QVEKKRRLTF DQVRSLEKNF EIENKLEPER KLQLAQELGL  120
QPRQVAVWFQ NRRARWKTKQ LERDYEVLSL DYNQLKNKFD DVVQEKQQLQ EEMDCLRGKL  180
PTPQPSSVLG AKEQSKKLKT ASQPSPPKMS EASVKLEQIC TEHTASYDAL VPFLEGDSSF  240
ESSDSMSSEI VNADSPRTSD SISLVPLNEF TTYPHIPTDS MVDSSIIHMS DSICDQMLSP  300
IDCHRISVKL EDGSFQDESC NYMLSQLDEE RGLPWWDWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.153020.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374920.10.0homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A2K1KL890.0A0A2K1KL89_PHYPA; Uncharacterized protein
STRINGPP1S154_145V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-41homeobox 1