PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3270V3.3.p
Common NamePHYPADRAFT_233176
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 719aa    MW: 81192.8 Da    PI: 4.8107
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3270V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002314337223
                       EETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                       +C +C+k+F++  +L++H r+  H
  Pp3c5_3270V3.3.p 314 ECMICSKRFKSVKQLQNHERSkkH 337
                       7*****************998666 PP
2zf-C2H216.62.3e-05688708121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       ++C+ Cg+ F ++s+L +Hi 
  Pp3c5_3270V3.3.p 688 HTCQTCGEDFESRSQLFKHIA 708
                       79*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.9E-231095IPR001623DnaJ domain
SMARTSM002714.6E-201077IPR001623DnaJ domain
SuperFamilySSF465656.67E-2311124IPR001623DnaJ domain
CDDcd062573.75E-161174IPR001623DnaJ domain
PROSITE profilePS5007619.111185IPR001623DnaJ domain
PfamPF002262.8E-191282IPR001623DnaJ domain
PRINTSPR006253.9E-141331IPR001623DnaJ domain
PRINTSPR006253.9E-143146IPR001623DnaJ domain
PRINTSPR006253.9E-145777IPR001623DnaJ domain
PROSITE patternPS0063606281IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.66E-11309356No hitNo description
PfamPF121719.0E-8313337IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.011313337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328313337IPR007087Zinc finger, C2H2
PROSITE patternPS000280315337IPR007087Zinc finger, C2H2
SMARTSM003550.099688712IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993688717IPR007087Zinc finger, C2H2
PROSITE patternPS000280690712IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MAPPVEGLTE CLYDTLGVER TVDPDKLKIA YRKMAMKWHP DKIQQSGAGA SPDDYQKATE  60
RFQMINRAYE VLSDPVERTW YDSHRERILN ASSSSNSANA APGEFDLNLW PYFSPSAFSG  120
FGETGNGFYS VYSEVFKKVH MQEQVFGRMY GNGDVSAAPE LGGKDTPYQN VYSFYRYWQG  180
FSTVKDFAWC DKYDVLQAPN RKVRRLMDEE NNKVRKRERK EFNNSVRQLA SFVKKRDKRV  240
IEKQLELQMI QKQKEQERKA RQLALEKEKQ EQIRLYKEQA WTVPSDQEEE EWDSDEDSDY  300
DGTAKLEKTT EELECMICSK RFKSVKQLQN HERSKKHLEN LAALKGAFRN DDEQVERLGK  360
QLGIDISSTK RLKKGKADVG SDEVQEPAAG SDAQSGLEGK DPNMGISSYE EGPEVVSDAE  420
PLRMPPTVNE IDGNPSLISK DNQSDDSIDD ILQDSHNELK EEDVPLKEPI SGEEEISDAE  480
EDTDRMLAYM LKLQRSRWAS SALPPETVSP DERLGSMEKS RAESIPDDEE VDEDDMLAAM  540
SSLQLNKQKA SSSEMDSEAR QTEDTRNDVV EKAGVLSRSE ESVVEDGDID DDDEKPKKGK  600
SRRRAKQDRK QAAISNRFAT PSTDLEQPES VSQNGDATSD TGGPSIGANE NVRAVSEVPQ  660
VKHSKLAHRG KKIKKEKLLQ KGAKQDSHTC QTCGEDFESR SQLFKHIAAT NHAILKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dmx_A3e-1313821273DnaJ homolog subfamily B member 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375541.10.0DNAJ protein JJJ1 homolog isoform X1
TrEMBLA0A2K1KIA00.0A0A2K1KIA0_PHYPA; Uncharacterized protein
STRINGPP1S72_296V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP354177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-76DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]