PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3270V3.5.p
Common NamePHYPADRAFT_233176
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 576aa    MW: 65044.8 Da    PI: 4.7654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3270V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015174197223
                       EETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                       +C +C+k+F++  +L++H r+  H
  Pp3c5_3270V3.5.p 174 ECMICSKRFKSVKQLQNHERSkkH 197
                       7*****************998666 PP
2zf-C2H216.91.7e-05545565121
                       EEETTTTEEESSHHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                       ++C+ Cg+ F ++s+L +Hi 
  Pp3c5_3270V3.5.p 545 HTCQTCGEDFESRSQLFKHIA 565
                       79*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.68E-11169216No hitNo description
PfamPF121716.9E-8173197IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.011173197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328173197IPR007087Zinc finger, C2H2
PROSITE patternPS000280175197IPR007087Zinc finger, C2H2
SMARTSM003550.099545569IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993545574IPR007087Zinc finger, C2H2
PROSITE patternPS000280547569IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MQEQVFGRMY GNGDVSAAPE LGGKDTPYQN VYSFYRYWQG FSTVKDFAWC DKYDVLQAPN  60
RKVRRLMDEE NNKVRKRERK EFNNSVRQLA SFVKKRDKRV IEKQLELQMI QKQKEQERKA  120
RQLALEKEKQ EQIRLYKEQA WTVPSDQEEE EWDSDEDSDY DGTAKLEKTT EELECMICSK  180
RFKSVKQLQN HERSKKHLEN LAALKGAFRN DDEQVERLGK QLGIDISSTK RLKKGKADVG  240
SDEVQEPAAG SDAQSGLEGK DPNMGISSYE EGPEVVSDAE PLRMPPTVNE IDGNPSLISK  300
DNQSDDSIDD ILQDSHNELK EEDVPLKEPI SGEEEISDAE EDTDRMLAYM LKLQRSRWAS  360
SALPPETVSP DERLGSMEKS RAESIPDDEE VDEDDMLAAM SSLQLNKQKA SSSEMDSEAR  420
QTEDTRNDVV EKAGVLSRSE ESVVEDGDID DDDEKPKKGK SRRRAKQDRK QAAISNRFAT  480
PSTDLEQPES VSQNGDATSD TGGPSIGANE NVRAVSEVPQ VKHSKLAHRG KKIKKEKKGA  540
KQDSHTCQTC GEDFESRSQL FKHIAATNHA ILKSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375542.10.0DNAJ protein JJJ1 homolog isoform X2
TrEMBLA0A2K1KIA00.0A0A2K1KIA0_PHYPA; Uncharacterized protein
STRINGPP1S72_296V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.18e-39DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]