PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_4660V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 354aa    MW: 38296.7 Da    PI: 6.0099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_4660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.2e-1773123256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr ++ +g Wv eIr p++   + r++lg+f tae+Aa+a++ a+++l+g+
  Pp3c5_4660V3.2.p  73 IYRGVRKRP-WGIWVTEIRRPKK---KSRIWLGSFATAEMAARAYDCAALALRGN 123
                       69*******.**********854...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.60E-2972130No hitNo description
PfamPF008473.1E-1272122IPR001471AP2/ERF domain
SMARTSM003808.2E-3373136IPR001471AP2/ERF domain
PROSITE profilePS5103222.98573130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2973131IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1973130IPR016177DNA-binding domain
PRINTSPR003672.1E-97485IPR001471AP2/ERF domain
PRINTSPR003672.1E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSDACEDPGD VKRPDVGGNE RSPDGTNAAA GADSGADEQE DSSERVESPT SSRRQETEVR  60
KKAKAEGDTR HPIYRGVRKR PWGIWVTEIR RPKKKSRIWL GSFATAEMAA RAYDCAALAL  120
RGNGALLNFP KLAHSLPRLA DLSDKSIQAA ATLAANNFTH RGEGNKSLDQ LLTSTSQLPA  180
SSPTSKPDAD YQHYEQCHGS RQASKSTSLR TRTSPQSPYE SSPNGSKSSS TQAQPQRRED  240
SSSAPHLPAT LTGNNQRIIT DSSAGGTSRR DNVDYSSSRD HSMENFQHQV AGDNLPGSCS  300
VQQPMYVDSD DMFAIGLTSL CDAMCIPPPD SEHATETDGE EGSNTWEPHL WSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17711301272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.149090.0sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374969.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374970.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374971.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374972.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374973.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374975.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374976.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374977.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374978.10.0ethylene-responsive transcription factor ERF034-like isoform X1
RefseqXP_024374979.10.0ethylene-responsive transcription factor ERF034-like isoform X1
TrEMBLA0A2K1KII30.0A0A2K1KII3_PHYPA; Uncharacterized protein
STRINGPP1S41_212V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-24ERF family protein