PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_889V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HB-other
Protein Properties Length: 114aa    MW: 12962.8 Da    PI: 11.1235
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_889V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-0847107157
                      TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 
                      +rkRt++t+eq e ++++ e    ++  +++e +A+ +   g+t +  k+W +N ++k k+
  Pp3c5_889V3.1.p  47 KRKRTQLTDEQREKMKSYAEHaGWTIVGQRKENIAAACkdiGVTPKTLKYWIHNAKQKLKR 107
                      79**************99998899**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.93E-1434107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-2234108IPR009057Homeodomain-like
PROSITE profilePS5007110.44644108IPR001356Homeobox domain
TIGRFAMsTIGR015651.9E-2147103IPR006455Homeodomain, ZF-HD class
PfamPF000465.5E-647107IPR001356Homeobox domain
CDDcd000860.0012747109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MNKEHRRRAQ LQLSPSHLHI QSNLLQVDRI SAPNGQAQNG SHPGKPKRKR TQLTDEQREK  60
MKSYAEHAGW TIVGQRKENI AAACKDIGVT PKTLKYWIHN AKQKLKRSHD QAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375088.12e-79zinc-finger homeodomain protein 3-like
RefseqXP_024375488.15e-76uncharacterized protein LOC112282289
TrEMBLA0A2K1KHY51e-74A0A2K1KHY5_PHYPA; Uncharacterized protein
TrEMBLA0A2K1KI084e-78A0A2K1KI08_PHYPA; Uncharacterized protein
STRINGPP1S259_102V6.12e-75(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.14e-14homeobox protein 21