PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_10870V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 328aa    MW: 35698 Da    PI: 8.5002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_10870V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00112444323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C  Cg++Fsr +++  H+ ++
  Pp3c6_10870V3.2.p 24 CCECGRVFSRVESFIEHQDSC 44
                       *****************9887 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLQGLRSPVR LQSSFETCGT RGHCCECGRV FSRVESFIEH QDSCGAVKHK RLQSGVESER  60
KLSHQSNTTG RNSCESPSQS SDTTQAISFA QSGTWDTAAR SADSTKVNEY ELSRRIQENQ  120
TAYSVAMPPW LLDRRNQLEL LSFTQRLPKS GFSHVVASGS KITGNKSHLS HDSRSQITRC  180
SSIDLANHEV CYTLSKPLPT SPSSVDVNTP SLALSIRPCG TNVDLSTSVS SVDKKRSFSA  240
LEKEVLAFTD QRSQTSAGIR RIQCNSLCLA PPGSDLALSI FPEILTQSQN RASVDPAAPE  300
MDTAVSLKDF LKQAAPRLSF FPAVHSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376933.11e-104uncharacterized protein LOC112282945 isoform X3
TrEMBLA0A2K1KF680.0A0A2K1KF68_PHYPA; Uncharacterized protein
TrEMBLA9SSG50.0A9SSG5_PHYPA; Predicted protein
STRINGPP1S113_55V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.23e-13C2H2-like zinc finger protein