PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_1310V3.1.p

Common Name

PpVNS4

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 464aa MW: 52486.4 Da PI: 6.8475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_1310V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.7	9.9e-49	37	171	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 p+GfrFhPtdeelv yL+++v++ + + +++i+e+d+yk+ePwdL + ++ ++++wyfFs++dkky+tg+r+nratk+g+Wk Pp3c6_1310V3.1.p 37 PVGFRFHPTDEELVGWYLHNRVTAPPpeprEDDQRIIRELDLYKHEPWDLAEvckipgDHSVNQNNWYFFSHKDKKYPTGNRANRATKAGFWK 129 89*******************9997765444468**********854656654444788************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk + + + vg++ktLvfykgrap+g+ktdW+mhe+rl Pp3c6_1310V3.1.p 130 ATGRDKCIQT--RYSVGMRKTLVFYKGRAPHGQKTDWIMHEFRL 171 ****98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-52	33	195	IPR003441	NAC domain
PROSITE profile	PS51005	53.751	36	195	IPR003441	NAC domain
Pfam	PF02365	4.8E-26	37	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MRFSHKADRA TPLKSVAPYQ VDKMSYNNNN SSNVAIPVGF RFHPTDEELV GWYLHNRVTA 60 PPPEPREDDQ RIIRELDLYK HEPWDLAEVC KIPGDHSVNQ NNWYFFSHKD KKYPTGNRAN 120 RATKAGFWKA TGRDKCIQTR YSVGMRKTLV FYKGRAPHGQ KTDWIMHEFR LDDGNQAFRG 180 FDEAGAWVVC RVFRKTKNIK TKGDDTPSTS MEEDQHIALQ PDITDSPEKF SSDGGEDGRD 240 VDYPPTNMVP NHIANYDMHC KQELFPVNEF RNLHHNLPVH LDNHGIEAIL PQSVAPHSLF 300 RITAASTRSN YSAIHLPSSD FDQQMLQHMG TGSSAAGLFS PMPNNAYHAI IDDHPPRPHI 360 RGMGYRNSSE ILNGLAEFQS FGHPALQGDQ TLTDVVSRPL ERLQQLQQST SDLLSTNSVH 420 DVIHNFGMPS LSWQARPQSH FVEFCTNPDS INSHSSTFLS SGE*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MRFSHKADRA TPLKSVAPYQ VDKMSYNNNN SSNVAIPVGF RFHPTDEELV GWYLHNRVTA  60
PPPEPREDDQ RIIRELDLYK HEPWDLAEVC KIPGDHSVNQ NNWYFFSHKD KKYPTGNRAN  120
RATKAGFWKA TGRDKCIQTR YSVGMRKTLV FYKGRAPHGQ KTDWIMHEFR LDDGNQAFRG  180
FDEAGAWVVC RVFRKTKNIK TKGDDTPSTS MEEDQHIALQ PDITDSPEKF SSDGGEDGRD  240
VDYPPTNMVP NHIANYDMHC KQELFPVNEF RNLHHNLPVH LDNHGIEAIL PQSVAPHSLF  300
RITAASTRSN YSAIHLPSSD FDQQMLQHMG TGSSAAGLFS PMPNNAYHAI IDDHPPRPHI  360
RGMGYRNSSE ILNGLAEFQS FGHPALQGDQ TLTDVVSRPL ERLQQLQQST SDLLSTNSVH  420
DVIHNFGMPS LSWQARPQSH FVEFCTNPDS INSHSSTFLS SGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-39	32	195	13	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-39	32	195	13	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-39	32	195	13	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-39	32	195	13	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-39	32	195	16	168	NAC domain-containing protein 19
3swm_B	1e-39	32	195	16	168	NAC domain-containing protein 19
3swm_C	1e-39	32	195	16	168	NAC domain-containing protein 19
3swm_D	1e-39	32	195	16	168	NAC domain-containing protein 19
3swp_A	1e-39	32	195	16	168	NAC domain-containing protein 19
3swp_B	1e-39	32	195	16	168	NAC domain-containing protein 19
3swp_C	1e-39	32	195	16	168	NAC domain-containing protein 19
3swp_D	1e-39	32	195	16	168	NAC domain-containing protein 19
4dul_A	1e-39	32	195	13	165	NAC domain-containing protein 19
4dul_B	1e-39	32	195	13	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB898084	0.0	AB898084.1 Physcomitrella patens PpVNS4 mRNA for NAC transcription factor PpVNS4, complete cds, ecotype: Gransden 2004.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377728.1	0.0	NAC domain-containing protein 37-like isoform X1
TrEMBL	A0A2K1KE15	0.0	A0A2K1KE15_PHYPA; Uncharacterized protein
STRING	PP1S77_42V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	3e-67	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	Pp3c6_1310V3.1.p

Publications ? help Back to Top
Xu B, et al. Contribution of NAC transcription factors to plant adaptation to land. Science, 2014. 343(6178): p. 1505-8 [PMID:24652936]