PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_14470V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 574aa    MW: 62412.4 Da    PI: 7.7788
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_14470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.3e-21343401259
                        --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++ W+KYG K++++s++ r+YY+C+ ++C++kk v+ +++dp+v+e+tY ++H+++
  Pp3c6_14470V3.1.p 343 DDGHRgWKKYGNKSIQNSNHCRGYYKCSVKECRAKKMVQPTDTDPTVFEVTYVEKHTCS 401
                        688866***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.317337403IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-23337402IPR003657WRKY domain
SuperFamilySSF1182909.42E-20341401IPR003657WRKY domain
SMARTSM007743.7E-22342402IPR003657WRKY domain
PfamPF031066.5E-19343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAISMRQSNV PRWRGGQWAS EHCVQKVEEM LSRAIVHQEE LLKLLSVNFP DGAAGFVEAT  60
SLNTISPPVL RVLKSKIENS MDWCHLALCR LREIVLHTSS ASSSPSPSAQ QSMASSSSAA  120
ILSSYPKGSD ATSAAAAAAA VAAKLQVKNS HSLPRLNDPT PLSPLRVLLR KDQLSPHPFT  180
VQSHSGSAWN PNNLLFHDHS DPQLQPPPAP PGEDSSSQQR QKPQQGQKFS RLPVSMQVDH  240
SEWPMLAETG WAMDSTSLPP PLPSDPRQCS SSFQISNGGM SSTFSGDKNQ SVPEEQSYIN  300
KAPLRANRAR NNVGNIPRKL SGNETKVEVV LQKLNDAKKG IPDDGHRGWK KYGNKSIQNS  360
NHCRGYYKCS VKECRAKKMV QPTDTDPTVF EVTYVEKHTC SSTAQRRNRS TRVPAGSAAH  420
AGPSQGKDKS AEANDDEQAT FQGSRIRSPD FKKRTTAEMN PCEDGSIITE LNSVGGGCTG  480
AIQGAASCKR GRENESDNHS YLNNMDTSTT TTASEEEREQ VMGDGDAPME TYLHQSTRHH  540
QSAYGLDPLI WPFEMEASLS SGHKSVSMDS DSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377828.10.0probable WRKY transcription factor 65 isoform X1
TrEMBLA0A2K1KFK10.0A0A2K1KFK1_PHYPA; Uncharacterized protein
STRINGPP1S195_75V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-15WRKY DNA-binding protein 46