PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_19230V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 318aa MW: 34717.9 Da PI: 8.495

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_19230V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+++F++ L H+++H Pp3c6_19230V3.1.p 82 FNCNFCTRMFRTAQALGGHMNVH 104 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.0E-4	80	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.16E-7	80	111	No hit	No description
PROSITE profile	PS50157	11.24	82	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	84	104	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MEVLMQVQQC GEYAVRGHAG SRLSASPQVT IVQTATQNMN VVGDSKRSST ASPSTRAYDD 60 SDIDVSCKAS PLYDQYWPIR TFNCNFCTRM FRTAQALGGH MNVHRRERAY ANEMLTDLHP 120 EPARHTFSCS MVNRTPAAQY TSLQDIDPVS TQRNAGGSLM AASERRISSS PSLCWLSSLP 180 PPASVTQLHS PSSNATSSQA TQQQRTALLN LSRFQPVERL HPTSSLQVPA PFPAHQLTSA 240 PATNSCRVDL VSTQGPAPRG SFVRNGNPIL SHNLVLGSCY ETRSEVLCDF MSRRSFAEPG 300 PRAHQPSGEK LDLELRL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379216.1	0.0	uncharacterized protein LOC112284003
TrEMBL	A0A2K1KG94	0.0	A0A2K1KG94_PHYPA; Uncharacterized protein
STRING	PP1S14_187V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c6_19230V3.1.p