PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_26770V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 192aa MW: 22070.5 Da PI: 8.0436

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_26770V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.2e-20	76	128	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +ftk ql++Le+ F++ + p+a+++ LA++lg+++rqV vWFqNrRa+ k Pp3c6_26770V3.1.p 76 KLRFTKAQLRVLEDTFQRLQRPNAHQKSTLAMELGVQTRQVEVWFQNRRARGK 128 568************************************************88 PP
2	HD-ZIP_I/II	88.7	7.5e-29	75	155	2	82
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r++k q+++LE++F++ ++ + ++K++la eLg+q+rqv+vWFqnrRAR k+k+ E+d+e+L+++++ l en++L+ Pp3c6_26770V3.1.p 75 QKLRFTKAQLRVLEDTFQRLQRPNAHQKSTLAMELGVQTRQVEVWFQNRRARGKAKRNESDCEVLRQRCQDLIVENHHLNY 155 79***************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.054	70	130	IPR001356	Homeobox domain
SMART	SM00389	2.2E-15	72	134	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	73	129	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-17	76	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.2E-19	77	134	IPR009057	Homeodomain-like
CDD	cd00086	1.26E-14	78	126	No hit	No description
PRINTS	PR00031	2.6E-5	101	110	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.6E-5	110	126	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGSSYDSYYN RSSFPGRENY LDYSSGNMGS CECAESSLSS AMTLQEQREM LRSVFPGRCS 60 DNSQDYEDDD EGSSQKLRFT KAQLRVLEDT FQRLQRPNAH QKSTLAMELG VQTRQVEVWF 120 QNRRARGKAK RNESDCEVLR QRCQDLIVEN HHLNYLIQSE RMGYDSRHLT SNGGPLLRMA 180 LCNNCKKLRN S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377391.1	1e-141	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024377392.1	1e-141	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024377393.1	1e-141	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024377394.1	1e-141	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024377395.1	1e-141	homeobox-leucine zipper protein HOX17-like
TrEMBL	A0A2K1KH98	1e-140	A0A2K1KH98_PHYPA; Uncharacterized protein
STRING	PP1S53_4V6.1	1e-137	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-25	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Pp3c6_26770V3.1.p