PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_3190V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 433aa MW: 48427.9 Da PI: 8.8969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_3190V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	331	378	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR + ++ f+ Lr+l+P + K +Ka+iL A+ Y+k+Lq Pp3c6_3190V3.3.p 331 MNHMMAERRRRVKQKENFSALRKLVPIiS------KADKASILGDAIVYLKDLQ 378 6899*********************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.907	328	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-16	330	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	331	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.54E-12	331	382	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-16	332	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-12	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MYLPRSGVDV WQAYVNELNT LTDSTRWRVP STRPETDNIL QTPLPAKNQA LKYVKGSYKS 60 HSGTTSSSVS SLEDHGSKPQ VSVDSPAQNS LIFMDPASQR HRLGHRSDSH ASASSRRGAS 120 SHSREVQLQD ANTITAASQH ELRVVDDDVI NFNFEEEAQW QNLYHPPLDT TNLNQMSQLP 180 STSFEDVNMF NAPTVRNEPQ LPRQSTTSSI SAQSQGGQFK SWQHTRILAP MIQTDRTNQQ 240 LLRRCIDLMK TIPNLQQGAE RERSPVMNNT DSQERRVTSS SSPEAGLPDI SIAPDPFDQV 300 APSRGGHRPA RGGSRIATMG PIHAGHDEAA MNHMMAERRR RVKQKENFSA LRKLVPIISK 360 ADKASILGDA IVYLKDLQRQ IEELKESTAE TERRYEDLKI SYQSLEQRNK ELELLAGGAN 420 MRPARLHSMQ SF*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MYLPRSGVDV WQAYVNELNT LTDSTRWRVP STRPETDNIL QTPLPAKNQA LKYVKGSYKS  60
HSGTTSSSVS SLEDHGSKPQ VSVDSPAQNS LIFMDPASQR HRLGHRSDSH ASASSRRGAS  120
SHSREVQLQD ANTITAASQH ELRVVDDDVI NFNFEEEAQW QNLYHPPLDT TNLNQMSQLP  180
STSFEDVNMF NAPTVRNEPQ LPRQSTTSSI SAQSQGGQFK SWQHTRILAP MIQTDRTNQQ  240
LLRRCIDLMK TIPNLQQGAE RERSPVMNNT DSQERRVTSS SSPEAGLPDI SIAPDPFDQV  300
APSRGGHRPA RGGSRIATMG PIHAGHDEAA MNHMMAERRR RVKQKENFSA LRKLVPIISK  360
ADKASILGDA IVYLKDLQRQ IEELKESTAE TERRYEDLKI SYQSLEQRNK ELELLAGGAN  420
MRPARLHSMQ SF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377851.1	0.0	uncharacterized protein LOC112283437
TrEMBL	A0A2K1KE53	0.0	A0A2K1KE53_PHYPA; Uncharacterized protein
STRING	PP1S77_230V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	1e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c6_3190V3.3.p