PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_8660V3.3.p
Common NamePHYPADRAFT_99319
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 595aa    MW: 65791.5 Da    PI: 6.1251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_8660V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.8e-14383429354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h + Er+RR+ +N+++++Lr+l+P++     +K + a+i+  A+eY+k+L
  Pp3c6_8660V3.3.p 383 VNHFATERQRREYLNEKYQTLRSLVPNP-----TKADRASIVADAIEYVKEL 429
                       68**************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-16380445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.643380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-11383429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-12383434No hitNo description
Gene3DG3DSA:4.10.280.105.5E-15384442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MRMFDCLQSN LPECERELQV RIRSHASDLE RNPTSLPETP TSPAILLQEN NVSGQLLSSK  60
RVRLIQNMHR YNSPNNMTYD DSRYFNGNQE STFDVENEAP ETAGRNMMLN FGGAMDRLDP  120
SASFPGLGEL PSNGMEPAVE QNLTGTFTGD LNSTAYEVGD DHSHLLQEML QQHPQSQQAQ  180
STDAHSQAPA TASHGSWEDS LHVLQEMVHL QQQQQQQVHQ IYNQTQTEHA FNQGYNADRF  240
RSAAFGGSAK FPGESDLLNL FQFPRSTTTS AIPSFGYTAG IRGKGPLYST STISGPVNTG  300
SIYENRGIGY DPLLAHHLQN SSESFFHNLS RGNTPETSRH GGPNILVDLD QEREDLSGKN  360
VASAYGSKRD HGAASGKGEP RGVNHFATER QRREYLNEKY QTLRSLVPNP TKADRASIVA  420
DAIEYVKELK RTVQELQLLV QEKRRAAGDS SGGKRRRSMD DADNYAGSCT TENASNGHLV  480
MQKGNDTFST DGSQLRSSWL QRTSQNGTHV DVRIVHDEVT IKVNQRRGKN CLVFDVIAVL  540
QELQLDLLQA SGATIGEHDV FLFNTKILEG SSTFAGYIAV KLLDALDRHL VINP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442456KRRAAGDSSGGKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377598.10.0transcription factor EAT1-like isoform X4
TrEMBLA0A2K1KEW00.0A0A2K1KEW0_PHYPA; Uncharacterized protein
STRINGPP1S386_12V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.24e-47bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]