PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_9830V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 186aa    MW: 21459.8 Da    PI: 10.9709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_9830V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-1180122150
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                       +  +GV++  k+ +W A I++      +k+++lg+  + eeAa+++++a+
  Pp3c6_9830V3.2.p  80 CVMRGVYF--KNMKWQAAIKVE-----KKQVHLGTVSSQEEAARLYDRAA 122
                       568***99..47*********6.....6********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.79459123IPR001471AP2/ERF domain
PfamPF008471.1E-480122IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-881125IPR016177DNA-binding domain
SMARTSM003803.1E-483138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-783127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVSIRKRRHG GLSPGSLNTD KDSSLKQEVT VSRFRFATLP AIPSFRELHQ LYNPVSLPKE  60
REVKKRKRQR RKHQMNQESC VMRGVYFKNM KWQAAIKVEK KQVHLGTVSS QEEAARLYDR  120
AAYLCGREPN FELTEAEKQE LQLLRWEEFL ELTRQSILSK KRKRGNKNSS GKTTQAASSP  180
KALIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15766PKEREVKKRK
25867KEREVKKRKR
36469KRKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377636.11e-123ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024377637.11e-123ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024377638.11e-123ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024377639.11e-123ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2K1KF141e-122A0A2K1KF14_PHYPA; Uncharacterized protein
STRINGPP1S317_72V6.11e-122(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-42ERF family protein