PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_10780V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 178aa    MW: 20258.2 Da    PI: 9.9188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_10780V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.3e-134185248
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48
                       +ykG+r+++  +r+ +eIr +   + ++++++lg++ t+eeAa+a +a
  Pp3c7_10780V3.1.p 41 KYKGIRYRPELNRYISEIRPV---QpRKRKIWLGTYKTPEEAARAFDA 85
                       8******************97...3446*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.10441102IPR001471AP2/ERF domain
CDDcd000188.55E-134188No hitNo description
SMARTSM003808.2E-741105IPR001471AP2/ERF domain
PfamPF008477.9E-84184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1641100IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-124198IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MACDTQVVQS NLSSSVVGRG MGCQRSLSSR PANPRAVPHE KYKGIRYRPE LNRYISEIRP  60
VQPRKRKIWL GTYKTPEEAA RAFDAGIFYT KKQIDYNFED SPSILEPLPE NLSEEEVHVQ  120
IQKKAKAAAA TMQPQHEHLI LRKIASKIAH YSLESPIYYG RTHEPPKEIQ FAVVLNR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.58182e-71protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388119.19e-57ethylene-responsive transcription factor RAP2-9-like
TrEMBLA0A2K1KB911e-128A0A2K1KB91_PHYPA; Uncharacterized protein
STRINGPP1S87_98V6.11e-129(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-11ERF family protein