PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_12210V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 437aa    MW: 46694.3 Da    PI: 8.7475
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_12210V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09424425
                       ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                         Cr+f+r G C++G rCkF H
  Pp3c7_12210V3.2.p  4 QVCRDFQR-GSCRFGTRCKFLH 24
                       68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-6126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.97E-5327IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-7425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSRQVCRDFQ RGSCRFGTRC KFLHQTGSAP QQQNAFNSGP KQTQPGFGTN RFGAFNNAPN  60
YFNNQRTTQP QSTAPKDHRC GNPKVCQDQI KEDISTEQPT FWRLTSYAHW KFLPNDICGD  120
VSPEELRALA YDSGKQGLPF QEIVRREHSM NAAKIAEFET LQRNPYRGPA TQMSGGTPLG  180
QTQPSPFTSH TQTGFGFGTQ NQSAAPAGSF GQPQLMFGVP VTTPQAGSGF SNAFNKTPTN  240
PNSLQSSGFG QYSQLGQSGF GSAPKSVFGS QTITPFGTGI NVFGGGFGTP AAAQPAGTTN  300
SVNFGTSPFT TLGGFGTSPF AIPAANPQPS APAVIPPATF NTLPLGTAPP STKQTAIGVD  360
GIWQKETWKL GEVLCLLLCK NRSFCLLFSL HTAILASIVS SRDGLISSNC ILSAALMCQY  420
FALQIPEEEP PESIRY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.38611e-159gametophore| protonema| sporophyte
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380686.10.0zinc finger CCCH domain-containing protein 16-like
TrEMBLA0A2K1KBF80.0A0A2K1KBF8_PHYPA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-42C3H family protein